Analysis of interatomic Contacts of Structural Units in PDB entry:
5V4B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V4B entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5V4B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1002	GLU 1161
B	THR 2263	MET 2706
C	PRO 193	PRO 197
C	PRO 199	GLY 201

There are 16 helices in PDB entry 5V4B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1018	1022	Right-handed alpha
Helix 2	AA2	A	1024	1033	Right-handed alpha
Helix 3	AA3	A	1051	1065	Right-handed alpha
Helix 4	AA4	A	1086	1093	Right-handed alpha
Helix 5	AA5	A	1096	1111	Right-handed alpha
Helix 6	AA6	A	1112	1126	Right-handed alpha
Helix 7	AA7	A	1131	1140	Right-handed alpha
Helix 8	AA8	A	1146	1157	Right-handed alpha
Helix 9	AA9	B	2264	2273	Right-handed alpha
Helix 10	AB1	B	2279	2284	Right-handed alpha
Helix 11	AB2	B	2285	2295	Right-handed alpha
Helix 12	AB3	B	2297	2305	Right-handed alpha
Helix 13	AB4	B	2308	2316	Right-handed alpha
Helix 14	AB5	B	2317	2328	Right-handed alpha
Helix 15	AB6	B	2349	2368	Right-handed alpha
Helix 16	AB7	B	2528	2531	Right-handed 310

There are 9 sheets in PDB entry 5V4B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1013	1017	first strand
Strand 2	A	1003	1007	anti-parallel
Strand 3	A	1045	1046	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2374	2377	first strand
Strand 2	B	2696	2701	anti-parallel
Strand 3	B	2681	2688	anti-parallel
Strand 4	B	2670	2677	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2384	2390	first strand
Strand 2	B	2393	2398	anti-parallel
Strand 3	B	2403	2407	anti-parallel
Strand 4	B	2413	2417	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2424	2430	first strand
Strand 2	B	2433	2438	anti-parallel
Strand 3	B	2443	2447	anti-parallel
Strand 4	B	2453	2457	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2464	2470	first strand
Strand 2	B	2473	2478	anti-parallel
Strand 3	B	2483	2487	anti-parallel
Strand 4	B	2493	2497	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2504	2509	first strand
Strand 2	B	2514	2518	anti-parallel
Strand 3	B	2523	2527	anti-parallel
Strand 4	B	2532	2537	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2544	2549	first strand
Strand 2	B	2553	2558	anti-parallel
Strand 3	B	2563	2567	anti-parallel
Strand 4	B	2573	2577	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2584	2590	first strand
Strand 2	B	2593	2598	anti-parallel
Strand 3	B	2603	2607	anti-parallel
Strand 4	B	2613	2617	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2627	2632	first strand
Strand 2	B	2636	2641	anti-parallel
Strand 3	B	2645	2650	anti-parallel
Strand 4	B	2655	2662	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V4B

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V4B