Analysis of interatomic Contacts of Structural Units in PDB entry:
5V4E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V4E entry

There are 8 chains in PDB entry 5V4E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 227	SER 444
B	LEU 242	SER 444
C	LEU 242	SER 444
D	PRO 238	LEU 443
E	GLY 237	SER 444
F	SER 239	LEU 443
G	CYS 226	SER 444
H	CYS 226	LEU 443

There are 38 helices in PDB entry 5V4E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	246	252	Right-handed alpha
Helix 2	AA2	A	309	315	Right-handed alpha
Helix 3	AA3	A	356	360	Right-handed 310
Helix 4	AA4	A	414	419	Right-handed alpha
Helix 5	AA5	A	432	436	Right-handed 310
Helix 6	AA6	B	246	252	Right-handed alpha
Helix 7	AA7	B	309	315	Right-handed alpha
Helix 8	AA8	B	354	360	Right-handed 310
Helix 9	AA9	B	414	419	Right-handed alpha
Helix 10	AB1	B	432	436	Right-handed 310
Helix 11	AB2	C	246	252	Right-handed alpha
Helix 12	AB3	C	309	315	Right-handed alpha
Helix 13	AB4	C	354	360	Right-handed 310
Helix 14	AB5	C	414	419	Right-handed alpha
Helix 15	AB6	C	432	436	Right-handed 310
Helix 16	AB7	D	246	252	Right-handed alpha
Helix 17	AB8	D	309	315	Right-handed alpha
Helix 18	AB9	D	354	360	Right-handed 310
Helix 19	AC1	D	414	420	Right-handed alpha
Helix 20	AC2	D	432	436	Right-handed 310
Helix 21	AC3	E	246	252	Right-handed alpha
Helix 22	AC4	E	309	315	Right-handed alpha
Helix 23	AC5	E	356	360	Right-handed 310
Helix 24	AC6	E	414	419	Right-handed alpha
Helix 25	AC7	E	432	436	Right-handed 310
Helix 26	AC8	F	246	252	Right-handed alpha
Helix 27	AC9	F	309	315	Right-handed alpha
Helix 28	AD1	F	414	419	Right-handed alpha
Helix 29	AD2	G	246	252	Right-handed alpha
Helix 30	AD3	G	309	315	Right-handed alpha
Helix 31	AD4	G	356	360	Right-handed 310
Helix 32	AD5	G	414	419	Right-handed alpha
Helix 33	AD6	G	432	436	Right-handed 310
Helix 34	AD7	H	246	252	Right-handed alpha
Helix 35	AD8	H	309	315	Right-handed alpha
Helix 36	AD9	H	354	360	Right-handed 310
Helix 37	AE1	H	414	419	Right-handed alpha
Helix 38	AE2	H	432	436	Right-handed 310

There are 43 sheets in PDB entry 5V4E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	243	first strand
Strand 2	A	258	266	anti-parallel
Strand 3	A	300	307	anti-parallel
Strand 4	A	287	289	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	273	279	anti-parallel
Strand 3	A	319	325	anti-parallel
Strand 4	A	332	336	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	391	393	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	397	398	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	388	first strand
Strand 2	A	378	383	anti-parallel
Strand 3	A	423	428	anti-parallel
Strand 4	A	437	441	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	263	first strand
Strand 2	B	302	307	anti-parallel
Strand 3	B	287	290	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	276	279	anti-parallel
Strand 3	B	319	322	anti-parallel
Strand 4	B	334	336	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	391	393	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	397	398	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	387	first strand
Strand 2	B	377	383	anti-parallel
Strand 3	B	422	429	anti-parallel
Strand 4	B	437	442	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	260	first strand
Strand 2	C	305	307	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	278	279	anti-parallel
Strand 3	C	319	320	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	351	first strand
Strand 2	C	362	372	anti-parallel
Strand 3	C	404	413	anti-parallel
Strand 4	C	391	393	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	351	first strand
Strand 2	C	362	372	anti-parallel
Strand 3	C	404	413	anti-parallel
Strand 4	C	397	398	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	387	first strand
Strand 2	C	378	383	anti-parallel
Strand 3	C	423	428	anti-parallel
Strand 4	C	437	441	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	243	first strand
Strand 2	D	258	266	anti-parallel
Strand 3	D	300	307	anti-parallel
Strand 4	D	287	289	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	284	first strand
Strand 2	D	274	279	anti-parallel
Strand 3	D	319	324	anti-parallel
Strand 4	D	332	336	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	351	first strand
Strand 2	D	362	372	anti-parallel
Strand 3	D	404	413	anti-parallel
Strand 4	D	391	393	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	351	first strand
Strand 2	D	362	372	anti-parallel
Strand 3	D	404	413	anti-parallel
Strand 4	D	397	398	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	386	387	first strand
Strand 2	D	378	383	anti-parallel
Strand 3	D	423	428	anti-parallel
Strand 4	D	437	441	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	243	first strand
Strand 2	E	258	266	anti-parallel
Strand 3	E	300	307	anti-parallel
Strand 4	E	288	289	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	243	first strand
Strand 2	E	258	266	anti-parallel
Strand 3	E	300	307	anti-parallel
Strand 4	E	293	294	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	284	first strand
Strand 2	E	273	279	anti-parallel
Strand 3	E	319	325	anti-parallel
Strand 4	E	332	336	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	351	first strand
Strand 2	E	362	372	anti-parallel
Strand 3	E	404	413	anti-parallel
Strand 4	E	391	393	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	351	first strand
Strand 2	E	362	372	anti-parallel
Strand 3	E	404	413	anti-parallel
Strand 4	E	397	398	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	386	388	first strand
Strand 2	E	378	383	anti-parallel
Strand 3	E	423	428	anti-parallel
Strand 4	E	437	441	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	240	242	first strand
Strand 2	F	258	263	anti-parallel
Strand 3	F	302	307	anti-parallel
Strand 4	F	287	289	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	319	321	first strand
Strand 2	F	334	336	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	351	first strand
Strand 2	F	362	372	anti-parallel
Strand 3	F	404	413	anti-parallel
Strand 4	F	391	393	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	351	first strand
Strand 2	F	362	372	anti-parallel
Strand 3	F	404	413	anti-parallel
Strand 4	F	397	398	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	386	387	first strand
Strand 2	F	378	383	anti-parallel
Strand 3	F	423	428	anti-parallel
Strand 4	F	437	441	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	234	235	first strand
Strand 2	H	233	234	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	239	243	first strand
Strand 2	G	258	266	anti-parallel
Strand 3	G	300	307	anti-parallel
Strand 4	G	288	289	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	282	284	first strand
Strand 2	G	273	279	anti-parallel
Strand 3	G	319	325	anti-parallel
Strand 4	G	332	336	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	347	351	first strand
Strand 2	G	362	372	anti-parallel
Strand 3	G	404	413	anti-parallel
Strand 4	G	391	393	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	347	351	first strand
Strand 2	G	362	372	anti-parallel
Strand 3	G	404	413	anti-parallel
Strand 4	G	397	398	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	386	387	first strand
Strand 2	G	378	383	anti-parallel
Strand 3	G	423	428	anti-parallel
Strand 4	G	437	441	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	239	243	first strand
Strand 2	H	258	266	anti-parallel
Strand 3	H	300	307	anti-parallel
Strand 4	H	287	289	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	239	243	first strand
Strand 2	H	258	266	anti-parallel
Strand 3	H	300	307	anti-parallel
Strand 4	H	293	294	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	282	284	first strand
Strand 2	H	273	279	anti-parallel
Strand 3	H	319	325	anti-parallel
Strand 4	H	332	336	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	347	351	first strand
Strand 2	H	362	372	anti-parallel
Strand 3	H	404	413	anti-parallel
Strand 4	H	391	393	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	347	351	first strand
Strand 2	H	362	372	anti-parallel
Strand 3	H	404	413	anti-parallel
Strand 4	H	397	398	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	386	387	first strand
Strand 2	H	377	383	anti-parallel
Strand 3	H	423	429	anti-parallel
Strand 4	H	437	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V4E

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V4E