Analysis of interatomic Contacts of Structural Units in PDB entry:
5V4M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V4M entry

There are 7 chains in PDB entry 5V4M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLU 4	ASP 181
F	GLY -2	ALA 437
A	GLU 4	ASP 181
C	GLY -2	ALA 437
G	GLU 4	ASP 181
I	GLY -2	ALA 437
J	GLU 4	ASN 78

There are 29 helices in PDB entry 5V4M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	45	51	Right-handed 310
Helix 2	AA2	D	55	77	Right-handed alpha
Helix 3	AA3	F	298	300	Right-handed 310
Helix 4	AA4	F	301	311	Right-handed alpha
Helix 5	AA5	F	311	325	Right-handed alpha
Helix 6	AA6	F	325	334	Right-handed alpha
Helix 7	AA7	F	335	337	Right-handed 310
Helix 8	AA8	A	45	51	Right-handed 310
Helix 9	AA9	A	55	77	Right-handed alpha
Helix 10	AB1	C	298	300	Right-handed 310
Helix 11	AB2	C	301	311	Right-handed alpha
Helix 12	AB3	C	311	320	Right-handed alpha
Helix 13	AB4	C	320	325	Right-handed alpha
Helix 14	AB5	C	325	334	Right-handed alpha
Helix 15	AB6	C	335	337	Right-handed 310
Helix 16	AB7	G	45	51	Right-handed 310
Helix 17	AB8	G	55	77	Right-handed alpha
Helix 18	AB9	I	298	300	Right-handed 310
Helix 19	AC1	I	301	311	Right-handed alpha
Helix 20	AC2	I	311	325	Right-handed alpha
Helix 21	AC3	I	325	334	Right-handed alpha
Helix 22	AC4	I	335	337	Right-handed 310
Helix 23	AC5	J	45	51	Right-handed 310
Helix 24	AC6	J	55	77	Right-handed alpha
Helix 25	AC7	L	298	300	Right-handed 310
Helix 26	AC8	L	301	311	Right-handed alpha
Helix 27	AC9	L	311	325	Right-handed alpha
Helix 28	AD1	L	325	334	Right-handed alpha
Helix 29	AD2	L	335	337	Right-handed 310

There are 28 sheets in PDB entry 5V4M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	43	first strand
Strand 2	D	29	35	anti-parallel
Strand 3	D	19	26	anti-parallel
Strand 4	D	5	15	anti-parallel
Strand 5	F	254	265	anti-parallel
Strand 6	F	270	279	anti-parallel
Strand 7	F	282	288	anti-parallel
Strand 8	F	294	296	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	93	first strand
Strand 2	D	103	112	anti-parallel
Strand 3	D	145	153	anti-parallel
Strand 4	D	133	134	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	93	first strand
Strand 2	D	103	112	anti-parallel
Strand 3	D	145	153	anti-parallel
Strand 4	D	138	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	128	first strand
Strand 2	D	118	123	anti-parallel
Strand 3	D	161	166	anti-parallel
Strand 4	D	174	178	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	345	351	first strand
Strand 2	F	361	369	anti-parallel
Strand 3	F	402	409	anti-parallel
Strand 4	F	389	391	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	345	351	first strand
Strand 2	F	361	369	anti-parallel
Strand 3	F	402	409	anti-parallel
Strand 4	F	395	396	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	383	385	first strand
Strand 2	F	375	380	anti-parallel
Strand 3	F	417	423	anti-parallel
Strand 4	F	431	436	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	29	35	anti-parallel
Strand 3	A	19	26	anti-parallel
Strand 4	A	5	15	anti-parallel
Strand 5	C	254	265	anti-parallel
Strand 6	C	270	279	anti-parallel
Strand 7	C	282	288	anti-parallel
Strand 8	C	294	296	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	133	134	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	138	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	118	123	anti-parallel
Strand 3	A	160	166	anti-parallel
Strand 4	A	174	179	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	351	first strand
Strand 2	C	361	369	anti-parallel
Strand 3	C	402	409	anti-parallel
Strand 4	C	389	391	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	351	first strand
Strand 2	C	361	369	anti-parallel
Strand 3	C	402	409	anti-parallel
Strand 4	C	395	396	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	385	first strand
Strand 2	C	375	380	anti-parallel
Strand 3	C	417	423	anti-parallel
Strand 4	C	431	436	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	43	first strand
Strand 2	G	29	35	anti-parallel
Strand 3	G	19	26	anti-parallel
Strand 4	G	5	15	anti-parallel
Strand 5	I	254	265	anti-parallel
Strand 6	I	270	279	anti-parallel
Strand 7	I	282	288	anti-parallel
Strand 8	I	294	296	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	93	first strand
Strand 2	G	103	112	anti-parallel
Strand 3	G	145	153	anti-parallel
Strand 4	G	133	134	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	93	first strand
Strand 2	G	103	112	anti-parallel
Strand 3	G	145	153	anti-parallel
Strand 4	G	138	139	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	128	first strand
Strand 2	G	118	123	anti-parallel
Strand 3	G	161	166	anti-parallel
Strand 4	G	174	178	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	345	351	first strand
Strand 2	I	361	369	anti-parallel
Strand 3	I	402	409	anti-parallel
Strand 4	I	389	391	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	345	351	first strand
Strand 2	I	361	369	anti-parallel
Strand 3	I	402	409	anti-parallel
Strand 4	I	395	396	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	383	385	first strand
Strand 2	I	375	380	anti-parallel
Strand 3	I	417	423	anti-parallel
Strand 4	I	431	436	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	43	first strand
Strand 2	J	29	35	anti-parallel
Strand 3	J	19	26	anti-parallel
Strand 4	J	5	15	anti-parallel
Strand 5	L	254	265	anti-parallel
Strand 6	L	270	279	anti-parallel
Strand 7	L	282	288	anti-parallel
Strand 8	L	294	296	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	93	first strand
Strand 2	J	103	112	anti-parallel
Strand 3	J	145	153	anti-parallel
Strand 4	J	133	134	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	93	first strand
Strand 2	J	103	112	anti-parallel
Strand 3	J	145	153	anti-parallel
Strand 4	J	138	139	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	126	128	first strand
Strand 2	J	118	123	anti-parallel
Strand 3	J	161	166	anti-parallel
Strand 4	J	174	178	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	345	351	first strand
Strand 2	L	361	369	anti-parallel
Strand 3	L	402	409	anti-parallel
Strand 4	L	389	391	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	345	351	first strand
Strand 2	L	361	369	anti-parallel
Strand 3	L	402	409	anti-parallel
Strand 4	L	395	396	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	383	385	first strand
Strand 2	L	375	380	anti-parallel
Strand 3	L	417	423	anti-parallel
Strand 4	L	431	436	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V4M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V4M