Analysis of interatomic Contacts of Structural Units in PDB entry:
5V4N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V4N entry

There are 4 chains in PDB entry 5V4N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	THR 182
C	TRP 1	ALA 439
D	GLU 4	THR 182
F	TRP 1	ALA 439

There are 13 helices in PDB entry 5V4N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	52	Right-handed alpha
Helix 2	AA2	A	55	77	Right-handed alpha
Helix 3	AA3	C	268	271	Right-handed 310
Helix 4	AA4	C	303	313	Right-handed alpha
Helix 5	AA5	C	313	322	Right-handed alpha
Helix 6	AA6	C	322	327	Right-handed alpha
Helix 7	AA7	C	327	336	Right-handed alpha
Helix 8	AA8	D	47	52	Right-handed alpha
Helix 9	AA9	D	55	77	Right-handed alpha
Helix 10	AB1	F	303	313	Right-handed alpha
Helix 11	AB2	F	313	322	Right-handed alpha
Helix 12	AB3	F	322	327	Right-handed alpha
Helix 13	AB4	F	327	336	Right-handed alpha

There are 14 sheets in PDB entry 5V4N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	29	35	anti-parallel
Strand 3	A	19	26	anti-parallel
Strand 4	A	5	15	anti-parallel
Strand 5	C	256	267	anti-parallel
Strand 6	C	272	281	anti-parallel
Strand 7	C	284	290	anti-parallel
Strand 8	C	296	298	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	133	134	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	138	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	118	123	anti-parallel
Strand 3	A	161	166	anti-parallel
Strand 4	A	174	178	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	353	first strand
Strand 2	C	363	371	anti-parallel
Strand 3	C	404	411	anti-parallel
Strand 4	C	391	393	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	353	first strand
Strand 2	C	363	371	anti-parallel
Strand 3	C	404	411	anti-parallel
Strand 4	C	397	398	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	387	first strand
Strand 2	C	377	382	anti-parallel
Strand 3	C	419	425	anti-parallel
Strand 4	C	433	438	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	43	first strand
Strand 2	D	29	35	anti-parallel
Strand 3	D	19	26	anti-parallel
Strand 4	D	5	15	anti-parallel
Strand 5	F	256	267	anti-parallel
Strand 6	F	272	281	anti-parallel
Strand 7	F	284	290	anti-parallel
Strand 8	F	296	298	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	103	112	anti-parallel
Strand 3	D	145	153	anti-parallel
Strand 4	D	133	134	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	103	112	anti-parallel
Strand 3	D	145	153	anti-parallel
Strand 4	D	138	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	128	first strand
Strand 2	D	118	123	anti-parallel
Strand 3	D	160	166	anti-parallel
Strand 4	D	174	179	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	353	first strand
Strand 2	F	363	371	anti-parallel
Strand 3	F	404	411	anti-parallel
Strand 4	F	391	393	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	353	first strand
Strand 2	F	363	371	anti-parallel
Strand 3	F	404	411	anti-parallel
Strand 4	F	397	398	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	385	386	first strand
Strand 2	F	377	382	anti-parallel
Strand 3	F	419	425	anti-parallel
Strand 4	F	433	438	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V4N

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V4N