Analysis of interatomic Contacts of Structural Units in PDB entry:
5V4S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V4S entry

There are 4 chains in PDB entry 5V4S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 7	HIS 430
B	ARG 7	HIS 430
C	ARG 7	HIS 430
D	ARG 7	HIS 430

There are 76 helices in PDB entry 5V4S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	27	Right-handed alpha
Helix 2	AA2	A	28	32	Right-handed 310
Helix 3	AA3	A	40	59	Right-handed alpha
Helix 4	AA4	A	84	93	Right-handed alpha
Helix 5	AA5	A	95	104	Right-handed alpha
Helix 6	AA6	A	114	120	Right-handed alpha
Helix 7	AA7	A	121	127	Right-handed 310
Helix 8	AA8	A	128	141	Right-handed alpha
Helix 9	AA9	A	145	173	Right-handed alpha
Helix 10	AB1	A	179	195	Right-handed alpha
Helix 11	AB2	A	206	260	Right-handed alpha
Helix 12	AB3	A	262	280	Right-handed alpha
Helix 13	AB4	A	284	290	Right-handed alpha
Helix 14	AB5	A	293	310	Right-handed alpha
Helix 15	AB6	A	312	317	Right-handed alpha
Helix 16	AB7	A	319	330	Right-handed alpha
Helix 17	AB8	A	380	386	Right-handed alpha
Helix 18	AB9	A	407	417	Right-handed alpha
Helix 19	AC1	A	417	429	Right-handed alpha
Helix 20	AC2	B	8	27	Right-handed alpha
Helix 21	AC3	B	28	32	Right-handed 310
Helix 22	AC4	B	40	59	Right-handed alpha
Helix 23	AC5	B	84	93	Right-handed alpha
Helix 24	AC6	B	95	104	Right-handed alpha
Helix 25	AC7	B	114	120	Right-handed alpha
Helix 26	AC8	B	121	127	Right-handed 310
Helix 27	AC9	B	128	141	Right-handed alpha
Helix 28	AD1	B	145	173	Right-handed alpha
Helix 29	AD2	B	179	195	Right-handed alpha
Helix 30	AD3	B	206	260	Right-handed alpha
Helix 31	AD4	B	262	280	Right-handed alpha
Helix 32	AD5	B	284	290	Right-handed alpha
Helix 33	AD6	B	293	310	Right-handed alpha
Helix 34	AD7	B	312	317	Right-handed alpha
Helix 35	AD8	B	319	330	Right-handed alpha
Helix 36	AD9	B	380	386	Right-handed alpha
Helix 37	AE1	B	407	417	Right-handed alpha
Helix 38	AE2	B	417	429	Right-handed alpha
Helix 39	AE3	C	8	27	Right-handed alpha
Helix 40	AE4	C	28	32	Right-handed 310
Helix 41	AE5	C	40	59	Right-handed alpha
Helix 42	AE6	C	84	93	Right-handed alpha
Helix 43	AE7	C	95	104	Right-handed alpha
Helix 44	AE8	C	114	120	Right-handed alpha
Helix 45	AE9	C	121	127	Right-handed 310
Helix 46	AF1	C	128	141	Right-handed alpha
Helix 47	AF2	C	145	173	Right-handed alpha
Helix 48	AF3	C	179	195	Right-handed alpha
Helix 49	AF4	C	206	260	Right-handed alpha
Helix 50	AF5	C	262	280	Right-handed alpha
Helix 51	AF6	C	284	290	Right-handed alpha
Helix 52	AF7	C	293	310	Right-handed alpha
Helix 53	AF8	C	312	317	Right-handed alpha
Helix 54	AF9	C	319	330	Right-handed alpha
Helix 55	AG1	C	380	386	Right-handed alpha
Helix 56	AG2	C	407	417	Right-handed alpha
Helix 57	AG3	C	417	429	Right-handed alpha
Helix 58	AG4	D	8	27	Right-handed alpha
Helix 59	AG5	D	28	32	Right-handed 310
Helix 60	AG6	D	40	59	Right-handed alpha
Helix 61	AG7	D	84	93	Right-handed alpha
Helix 62	AG8	D	95	104	Right-handed alpha
Helix 63	AG9	D	114	120	Right-handed alpha
Helix 64	AH1	D	121	127	Right-handed 310
Helix 65	AH2	D	128	141	Right-handed alpha
Helix 66	AH3	D	145	173	Right-handed alpha
Helix 67	AH4	D	179	195	Right-handed alpha
Helix 68	AH5	D	206	260	Right-handed alpha
Helix 69	AH6	D	262	280	Right-handed alpha
Helix 70	AH7	D	284	290	Right-handed alpha
Helix 71	AH8	D	293	310	Right-handed alpha
Helix 72	AH9	D	312	317	Right-handed alpha
Helix 73	AI1	D	319	330	Right-handed alpha
Helix 74	AI2	D	380	386	Right-handed alpha
Helix 75	AI3	D	407	417	Right-handed alpha
Helix 76	AI4	D	417	429	Right-handed alpha

There are 8 sheets in PDB entry 5V4S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	335	first strand
Strand 2	A	400	406	anti-parallel
Strand 3	A	350	356	anti-parallel
Strand 4	A	378	379	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	342	first strand
Strand 2	A	393	396	anti-parallel
Strand 3	A	359	362	anti-parallel
Strand 4	A	369	373	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	335	first strand
Strand 2	B	400	406	anti-parallel
Strand 3	B	350	356	anti-parallel
Strand 4	B	378	379	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	342	first strand
Strand 2	B	393	396	anti-parallel
Strand 3	B	359	362	anti-parallel
Strand 4	B	369	373	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	335	first strand
Strand 2	C	400	406	anti-parallel
Strand 3	C	350	356	anti-parallel
Strand 4	C	378	379	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	342	first strand
Strand 2	C	393	396	anti-parallel
Strand 3	C	359	362	anti-parallel
Strand 4	C	369	373	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	335	first strand
Strand 2	D	400	406	anti-parallel
Strand 3	D	350	356	anti-parallel
Strand 4	D	378	379	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	342	first strand
Strand 2	D	393	396	anti-parallel
Strand 3	D	359	362	anti-parallel
Strand 4	D	369	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V4S

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V4S