Analysis of interatomic Contacts of Structural Units in PDB entry:
5V52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V52 entry

There are 4 chains in PDB entry 5V52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 24VAL 126
B
 THR 24LEU 127
C
 ASP 33VAL 160
D
 ASP 33ARG 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5V52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 103Right-handed 310
Helix 2
AA2
B
99 103Right-handed 310
Helix 3
AA3
C
76 79Right-handed 310
Helix 4
AA4
C
131 135Right-handed 310
Helix 5
AA5
D
76 79Right-handed 310
Helix 6
AA6
D
131 135Right-handed 310
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There are 11 sheets in PDB entry 5V52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
45 48anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
53 61anti-parallel
Strand 4
A
104 113anti-parallel
Strand 5
A
116 125anti-parallel
Strand 6
A
32 34parallel
Strand 7
B
32 36anti-parallel
Strand 8
B
116 127parallel
Strand 9
B
104 113anti-parallel
Strand 10
B
53 61anti-parallel
Strand 11
B
64 70anti-parallel
Strand 12
B
74 77anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
93 95anti-parallel
Strand 3
A
85 87anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
45 48anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
93 95anti-parallel
Strand 3
B
85 87anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 38first strand
Strand 2
C
54 57anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 45first strand
Strand 2
C
148 159parallel
Strand 3
C
136 145anti-parallel
Strand 4
C
64 71anti-parallel
Strand 5
C
81 86anti-parallel
Strand 6
C
90 92anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 52first strand
Strand 2
C
125 127anti-parallel
Strand 3
C
103 105anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 38first strand
Strand 2
D
54 57anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 45first strand
Strand 2
D
148 159parallel
Strand 3
D
136 145anti-parallel
Strand 4
D
64 71anti-parallel
Strand 5
D
81 86anti-parallel
Strand 6
D
90 92anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 52first strand
Strand 2
D
125 127anti-parallel
Strand 3
D
103 105anti-parallel
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