Analysis of interatomic Contacts of Structural Units in PDB entry:
5V54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V54 entry

There are 2 chains in PDB entry 5V54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 38CYS 388
B
 ASP 37CYS 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5V54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 43Right-handed 310
Helix 2
AA2
A
45 77Right-handed alpha
Helix 3
AA3
A
82 102Right-handed alpha
Helix 4
AA4
A
102 113Right-handed alpha
Helix 5
AA5
A
118 150Right-handed alpha
Helix 6
AA6
A
153 161Right-handed alpha
Helix 7
AA7
A
162 189Right-handed alpha
Helix 8
AA8
A
205 217Right-handed alpha
Helix 9
AA9
A
217 1020Right-handed alpha
Helix 10
AB1
A
1022 1043Right-handed alpha
Helix 11
AB2
A
1045 1051Right-handed alpha
Helix 12
AB3
A
1055 1082Right-handed alpha
Helix 13
AB4
A
1086 1106Right-handed alpha
Helix 14
AB5
A
305 337Right-handed alpha
Helix 15
AB6
A
347 373Right-handed alpha
Helix 16
AB7
A
373 384Right-handed alpha
Helix 17
AB8
B
39 43Right-handed 310
Helix 18
AB9
B
45 77Right-handed alpha
Helix 19
AC1
B
82 102Right-handed alpha
Helix 20
AC2
B
102 113Right-handed alpha
Helix 21
AC3
B
118 150Right-handed alpha
Helix 22
AC4
B
153 161Right-handed alpha
Helix 23
AC5
B
162 188Right-handed alpha
Helix 24
AC6
B
205 217Right-handed alpha
Helix 25
AC7
B
217 1020Right-handed alpha
Helix 26
AC8
B
1022 1043Right-handed alpha
Helix 27
AC9
B
1055 1081Right-handed alpha
Helix 28
AD1
B
1088 1106Right-handed alpha
Helix 29
AD2
B
305 337Right-handed alpha
Helix 30
AD3
B
347 373Right-handed alpha
Helix 31
AD4
B
373 384Right-handed alpha
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There are no sheets in PDB entry 5V54
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il