Analysis of interatomic Contacts of Structural Units in PDB entry:
5V56

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V56 entry

There are 2 chains in PDB entry 5V56 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 59	THR 553
B	PRO 59	HIS 561

There are 54 helices in PDB entry 5V56. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	110	Right-handed alpha
Helix 2	AA2	A	111	114	Right-handed 310
Helix 3	AA3	A	115	131	Right-handed alpha
Helix 4	AA4	A	143	152	Right-handed alpha
Helix 5	AA5	A	154	161	Right-handed alpha
Helix 6	AA6	A	202	206	Right-handed 310
Helix 7	AA7	A	223	254	Right-handed alpha
Helix 8	AA8	A	255	260	Right-handed alpha
Helix 9	AA9	A	261	283	Right-handed alpha
Helix 10	AB1	A	284	286	Right-handed 310
Helix 11	AB2	A	288	295	Right-handed alpha
Helix 12	AB3	A	312	344	Right-handed alpha
Helix 13	AB4	A	356	379	Right-handed alpha
Helix 14	AB5	A	396	404	Right-handed alpha
Helix 15	AB6	A	404	432	Right-handed alpha
Helix 16	AB7	A	1013	1029	Right-handed alpha
Helix 17	AB8	A	1039	1041	Right-handed 310
Helix 18	AB9	A	1071	1077	Right-handed alpha
Helix 19	AC1	A	1078	1081	Right-handed 310
Helix 20	AC2	A	1102	1116	Right-handed alpha
Helix 21	AC3	A	1133	1147	Right-handed alpha
Helix 22	AC4	A	446	492	Right-handed alpha
Helix 23	AC5	A	514	534	Right-handed alpha
Helix 24	AC6	A	535	537	Right-handed 310
Helix 25	AC7	A	538	553	Right-handed alpha
Helix 26	AC8	B	98	110	Right-handed alpha
Helix 27	AC9	B	111	114	Right-handed 310
Helix 28	AD1	B	115	131	Right-handed alpha
Helix 29	AD2	B	143	152	Right-handed alpha
Helix 30	AD3	B	154	161	Right-handed alpha
Helix 31	AD4	B	180	184	Right-handed 310
Helix 32	AD5	B	202	206	Right-handed 310
Helix 33	AD6	B	223	255	Right-handed alpha
Helix 34	AD7	B	255	260	Right-handed alpha
Helix 35	AD8	B	261	283	Right-handed alpha
Helix 36	AD9	B	284	286	Right-handed 310
Helix 37	AE1	B	288	295	Right-handed alpha
Helix 38	AE2	B	312	345	Right-handed alpha
Helix 39	AE3	B	346	348	Right-handed 310
Helix 40	AE4	B	356	379	Right-handed alpha
Helix 41	AE5	B	396	404	Right-handed alpha
Helix 42	AE6	B	404	430	Right-handed alpha
Helix 43	AE7	B	431	433	Right-handed 310
Helix 44	AE8	B	1013	1029	Right-handed alpha
Helix 45	AE9	B	1039	1041	Right-handed 310
Helix 46	AF1	B	1071	1077	Right-handed alpha
Helix 47	AF2	B	1078	1081	Right-handed 310
Helix 48	AF3	B	1102	1116	Right-handed alpha
Helix 49	AF4	B	1129	1132	Right-handed 310
Helix 50	AF5	B	1133	1147	Right-handed alpha
Helix 51	AF6	B	446	493	Right-handed alpha
Helix 52	AF7	B	514	534	Right-handed alpha
Helix 53	AF8	B	535	537	Right-handed 310
Helix 54	AF9	B	538	553	Right-handed alpha

There are 16 sheets in PDB entry 5V56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	138	140	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	87	88	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	81	82	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	213	215	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	383	first strand
Strand 2	A	390	392	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1032	1037	first strand
Strand 2	A	1003	1009	parallel
Strand 3	A	1052	1057	parallel
Strand 4	A	1087	1094	parallel
Strand 5	A	1118	1119	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1032	1037	first strand
Strand 2	A	1003	1009	parallel
Strand 3	A	1052	1057	parallel
Strand 4	A	1087	1094	parallel
Strand 5	A	1124	1127	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1059	1060	first strand
Strand 2	A	1066	1067	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	138	140	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	87	88	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	81	82	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	213	215	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	383	first strand
Strand 2	B	390	392	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1031	1037	first strand
Strand 2	B	1002	1009	parallel
Strand 3	B	1052	1057	parallel
Strand 4	B	1087	1094	parallel
Strand 5	B	1118	1119	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1031	1037	first strand
Strand 2	B	1002	1009	parallel
Strand 3	B	1052	1057	parallel
Strand 4	B	1087	1094	parallel
Strand 5	B	1124	1127	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1059	1060	first strand
Strand 2	B	1066	1067	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V56

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V56