Analysis of interatomic Contacts of Structural Units in PDB entry:
5V5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V5E entry

There are 2 chains in PDB entry 5V5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4LEU 193
B
 GLY 4THR 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5V5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 34Right-handed 310
Helix 2
AA2
A
73 87Right-handed alpha
Helix 3
AA3
A
87 92Right-handed alpha
Helix 4
AA4
A
100 110Right-handed alpha
Helix 5
AA5
A
119 123Right-handed 310
Helix 6
AA6
A
153 160Right-handed alpha
Helix 7
AA7
A
165 178Right-handed alpha
Helix 8
AA8
A
180 184Right-handed 310
Helix 9
AA9
B
26 34Right-handed 310
Helix 10
AB1
B
73 87Right-handed alpha
Helix 11
AB2
B
87 92Right-handed alpha
Helix 12
AB3
B
102 110Right-handed alpha
Helix 13
AB4
B
119 123Right-handed 310
Helix 14
AB5
B
153 159Right-handed alpha
Helix 15
AB6
B
165 179Right-handed alpha
Helix 16
AB7
B
180 184Right-handed 310
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There are 2 sheets in PDB entry 5V5E. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
12 15anti-parallel
Strand 3
A
112 117parallel
Strand 4
A
132 138anti-parallel
Strand 5
A
41 44parallel
Strand 6
A
53 61anti-parallel
Strand 7
A
64 71anti-parallel
Strand 8
A
5 10anti-parallel
Strand 9
A
149 151anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
149 151first strand
Strand 3
B
64 71first strand
Strand 4
B
53 61anti-parallel
Strand 5
B
41 44anti-parallel
Strand 6
B
132 138parallel
Strand 7
B
112 117anti-parallel
Strand 8
B
5 15parallel
Strand 9
B
149 151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il