Analysis of interatomic Contacts of Structural Units in PDB entry:
5V5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V5F entry

There are 3 chains in PDB entry 5V5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 200
B
 MET 1GLN 200
C
 MET 1GLN 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5V5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 45Right-handed alpha
Helix 2
AA2
A
89 91Right-handed 310
Helix 3
AA3
A
92 100Right-handed alpha
Helix 4
AA4
A
111 123Right-handed alpha
Helix 5
AA5
A
132 141Right-handed alpha
Helix 6
AA6
A
142 148Right-handed 310
Helix 7
AA7
A
149 159Right-handed alpha
Helix 8
AA8
A
162 171Right-handed alpha
Helix 9
AA9
A
172 175Right-handed 310
Helix 10
AB1
A
176 200Right-handed alpha
Helix 11
AB2
B
30 45Right-handed alpha
Helix 12
AB3
B
89 91Right-handed 310
Helix 13
AB4
B
92 100Right-handed alpha
Helix 14
AB5
B
111 123Right-handed alpha
Helix 15
AB6
B
132 141Right-handed alpha
Helix 16
AB7
B
142 148Right-handed 310
Helix 17
AB8
B
149 159Right-handed alpha
Helix 18
AB9
B
162 171Right-handed alpha
Helix 19
AC1
B
172 175Right-handed 310
Helix 20
AC2
B
176 200Right-handed alpha
Helix 21
AC3
C
30 45Right-handed alpha
Helix 22
AC4
C
89 91Right-handed 310
Helix 23
AC5
C
92 100Right-handed alpha
Helix 24
AC6
C
111 123Right-handed alpha
Helix 25
AC7
C
132 141Right-handed alpha
Helix 26
AC8
C
142 148Right-handed 310
Helix 27
AC9
C
149 159Right-handed alpha
Helix 28
AD1
C
162 171Right-handed alpha
Helix 29
AD2
C
172 175Right-handed 310
Helix 30
AD3
C
176 200Right-handed alpha
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There are 3 sheets in PDB entry 5V5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
16 23anti-parallel
Strand 3
A
78 83parallel
Strand 4
A
65 74anti-parallel
Strand 5
A
48 58anti-parallel
Strand 6
A
105 108parallel
Strand 7
A
129 131parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
16 23anti-parallel
Strand 3
B
78 83parallel
Strand 4
B
65 74anti-parallel
Strand 5
B
48 58anti-parallel
Strand 6
B
105 108parallel
Strand 7
B
129 131parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 10first strand
Strand 2
C
16 23anti-parallel
Strand 3
C
78 83parallel
Strand 4
C
65 74anti-parallel
Strand 5
C
48 58anti-parallel
Strand 6
C
105 108parallel
Strand 7
C
129 131parallel
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