Analysis of interatomic Contacts of Structural Units in PDB entry:
5V5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V5K entry

There are 8 chains in PDB entry 5V5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3GLN 164
B
 SER 3GLN 164
C
 SER 3GLN 164
D
 SER 3GLN 164
E
 SER 3GLN 164
F
 SER 3GLN 164
G
 SER 3GLN 164
H
 SER 3GLN 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5V5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 20Right-handed alpha
Helix 2
AA2
A
39 47Right-handed alpha
Helix 3
AA3
A
86 91Right-handed alpha
Helix 4
AA4
A
92 94Right-handed 310
Helix 5
AA5
A
96 109Right-handed alpha
Helix 6
AA6
A
133 147Right-handed alpha
Helix 7
AA7
A
157 161Right-handed 310
Helix 8
AA8
B
14 25Right-handed alpha
Helix 9
AA9
B
30 35Right-handed alpha
Helix 10
AB1
B
42 47Right-handed alpha
Helix 11
AB2
B
86 91Right-handed alpha
Helix 12
AB3
B
96 105Right-handed alpha
Helix 13
AB4
B
122 127Right-handed alpha
Helix 14
AB5
B
133 144Right-handed alpha
Helix 15
AB6
C
7 27Right-handed alpha
Helix 16
AB7
C
30 35Right-handed alpha
Helix 17
AB8
C
39 47Right-handed alpha
Helix 18
AB9
C
86 91Right-handed alpha
Helix 19
AC1
C
96 108Right-handed alpha
Helix 20
AC2
C
133 144Right-handed alpha
Helix 21
AC3
D
7 27Right-handed alpha
Helix 22
AC4
D
40 46Right-handed alpha
Helix 23
AC5
D
86 91Right-handed alpha
Helix 24
AC6
D
96 108Right-handed alpha
Helix 25
AC7
D
122 127Right-handed alpha
Helix 26
AC8
D
133 144Right-handed alpha
Helix 27
AC9
E
11 25Right-handed alpha
Helix 28
AD1
E
42 47Right-handed alpha
Helix 29
AD2
E
86 91Right-handed alpha
Helix 30
AD3
E
96 108Right-handed alpha
Helix 31
AD4
E
115 120Right-handed alpha
Helix 32
AD5
E
133 147Right-handed alpha
Helix 33
AD6
F
14 25Right-handed alpha
Helix 34
AD7
F
42 47Right-handed alpha
Helix 35
AD8
F
86 91Right-handed alpha
Helix 36
AD9
F
100 108Right-handed alpha
Helix 37
AE1
F
115 120Right-handed alpha
Helix 38
AE2
F
133 144Right-handed alpha
Helix 39
AE3
G
12 25Right-handed alpha
Helix 40
AE4
G
30 35Right-handed alpha
Helix 41
AE5
G
40 47Right-handed alpha
Helix 42
AE6
G
86 91Right-handed alpha
Helix 43
AE7
G
92 94Right-handed 310
Helix 44
AE8
G
96 105Right-handed alpha
Helix 45
AE9
G
133 144Right-handed alpha
Helix 46
AF1
H
7 12Right-handed alpha
Helix 47
AF2
H
12 18Right-handed alpha
Helix 48
AF3
H
18 23Right-handed alpha
Helix 49
AF4
H
42 47Right-handed alpha
Helix 50
AF5
H
86 91Right-handed alpha
Helix 51
AF6
H
96 109Right-handed alpha
Helix 52
AF7
H
133 144Right-handed alpha
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There are no sheets in PDB entry 5V5K
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il