Analysis of interatomic Contacts of Structural Units in PDB entry:
5V5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V5O entry

There are 3 chains in PDB entry 5V5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASN 75SER 497
A
 GLY 209ARG 216
B
 GLY 212ARG 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5V5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
77 86Right-handed alpha
Helix 2
AA2
C
89 104Right-handed alpha
Helix 3
AA3
C
111 118Right-handed alpha
Helix 4
AA4
C
120 129Right-handed alpha
Helix 5
AA5
C
133 149Right-handed alpha
Helix 6
AA6
C
151 161Right-handed alpha
Helix 7
AA7
C
162 171Right-handed alpha
Helix 8
AA8
C
175 191Right-handed alpha
Helix 9
AA9
C
193 203Right-handed alpha
Helix 10
AB1
C
205 212Right-handed alpha
Helix 11
AB2
C
217 221Right-handed 310
Helix 12
AB3
C
222 236Right-handed alpha
Helix 13
AB4
C
245 261Right-handed alpha
Helix 14
AB5
C
264 280Right-handed alpha
Helix 15
AB6
C
282 292Right-handed alpha
Helix 16
AB7
C
294 303Right-handed alpha
Helix 17
AB8
C
306 321Right-handed alpha
Helix 18
AB9
C
324 334Right-handed alpha
Helix 19
AC1
C
335 338Right-handed 310
Helix 20
AC2
C
339 344Right-handed alpha
Helix 21
AC3
C
348 363Right-handed alpha
Helix 22
AC4
C
366 376Right-handed alpha
Helix 23
AC5
C
378 388Right-handed alpha
Helix 24
AC6
C
390 408Right-handed alpha
Helix 25
AC7
C
409 419Right-handed alpha
Helix 26
AC8
C
421 428Right-handed alpha
Helix 27
AC9
C
429 431Right-handed 310
Helix 28
AD1
C
433 455Right-handed alpha
Helix 29
AD2
C
456 467Right-handed alpha
Helix 30
AD3
C
469 478Right-handed alpha
Helix 31
AD4
C
481 496Right-handed alpha
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There are no sheets in PDB entry 5V5O
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il