Analysis of interatomic Contacts of Structural Units in PDB entry:
5V5X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V5X entry

There are 4 chains in PDB entry 5V5X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 208	PHE 632
B	PRO 210	PHE 632
C	PRO 210	PHE 632
D	ASN 208	TYR 283

There are 17 helices in PDB entry 5V5X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	344	348	Right-handed 310
Helix 2	AA2	A	449	453	Right-handed 310
Helix 3	AA3	A	465	472	Right-handed alpha
Helix 4	AA4	A	566	570	Right-handed 310
Helix 5	AA5	B	344	348	Right-handed 310
Helix 6	AA6	B	449	453	Right-handed 310
Helix 7	AA7	B	465	467	Right-handed 310
Helix 8	AA8	B	468	472	Right-handed alpha
Helix 9	AA9	B	566	570	Right-handed 310
Helix 10	AB1	C	344	348	Right-handed 310
Helix 11	AB2	C	449	453	Right-handed 310
Helix 12	AB3	C	468	472	Right-handed alpha
Helix 13	AB4	C	566	570	Right-handed 310
Helix 14	AB5	D	344	348	Right-handed 310
Helix 15	AB6	D	449	454	Right-handed 310
Helix 16	AB7	D	465	472	Right-handed alpha
Helix 17	AB8	D	566	570	Right-handed 310

There are 40 sheets in PDB entry 5V5X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	222	first strand
Strand 2	A	296	306	parallel
Strand 3	A	282	290	anti-parallel
Strand 4	A	248	252	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	233	first strand
Strand 2	A	268	271	anti-parallel
Strand 3	A	260	262	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	320	first strand
Strand 2	A	333	340	anti-parallel
Strand 3	A	369	374	anti-parallel
Strand 4	A	360	364	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	401	411	parallel
Strand 3	A	385	394	anti-parallel
Strand 4	A	350	355	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	444	445	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	430	first strand
Strand 2	A	511	521	parallel
Strand 3	A	495	504	anti-parallel
Strand 4	A	455	462	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	441	first strand
Strand 2	A	481	484	anti-parallel
Strand 3	A	473	475	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	532	first strand
Strand 2	A	560	562	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	543	first strand
Strand 2	A	623	631	parallel
Strand 3	A	607	616	anti-parallel
Strand 4	A	572	579	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	558	first strand
Strand 2	A	593	596	anti-parallel
Strand 3	A	585	587	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	222	first strand
Strand 2	B	296	306	parallel
Strand 3	B	282	290	anti-parallel
Strand 4	B	248	251	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	233	first strand
Strand 2	B	268	271	anti-parallel
Strand 3	B	260	262	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	320	first strand
Strand 2	B	333	340	anti-parallel
Strand 3	B	369	374	anti-parallel
Strand 4	B	360	366	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	B	401	411	parallel
Strand 3	B	385	394	anti-parallel
Strand 4	B	350	355	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	420	first strand
Strand 2	B	444	445	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	430	first strand
Strand 2	B	511	521	parallel
Strand 3	B	495	504	anti-parallel
Strand 4	B	455	462	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	441	first strand
Strand 2	B	481	484	anti-parallel
Strand 3	B	473	475	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	532	first strand
Strand 2	B	560	562	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	542	first strand
Strand 2	B	623	631	parallel
Strand 3	B	607	616	anti-parallel
Strand 4	B	572	579	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	558	first strand
Strand 2	B	593	596	anti-parallel
Strand 3	B	585	587	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	222	first strand
Strand 2	C	296	306	parallel
Strand 3	C	282	290	anti-parallel
Strand 4	C	248	252	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	233	first strand
Strand 2	C	268	271	anti-parallel
Strand 3	C	260	262	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	320	first strand
Strand 2	C	333	340	anti-parallel
Strand 3	C	369	374	anti-parallel
Strand 4	C	360	364	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	325	first strand
Strand 2	C	401	411	parallel
Strand 3	C	385	394	anti-parallel
Strand 4	C	350	354	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	420	first strand
Strand 2	C	444	445	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	424	430	first strand
Strand 2	C	511	521	parallel
Strand 3	C	495	504	anti-parallel
Strand 4	C	455	462	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	441	first strand
Strand 2	C	481	484	anti-parallel
Strand 3	C	473	475	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	529	532	first strand
Strand 2	C	560	562	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	540	543	first strand
Strand 2	C	623	631	parallel
Strand 3	C	607	616	anti-parallel
Strand 4	C	572	579	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	555	558	first strand
Strand 2	C	593	596	anti-parallel
Strand 3	C	585	587	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	222	first strand
Strand 2	D	296	306	parallel
Strand 3	D	282	290	anti-parallel
Strand 4	D	248	252	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	233	first strand
Strand 2	D	268	271	anti-parallel
Strand 3	D	260	262	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	320	first strand
Strand 2	D	333	340	anti-parallel
Strand 3	D	369	374	anti-parallel
Strand 4	D	360	364	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	325	first strand
Strand 2	D	401	411	parallel
Strand 3	D	385	394	anti-parallel
Strand 4	D	350	353	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	420	first strand
Strand 2	D	444	445	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	430	first strand
Strand 2	D	511	521	parallel
Strand 3	D	495	503	anti-parallel
Strand 4	D	456	462	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	437	441	first strand
Strand 2	D	481	484	anti-parallel
Strand 3	D	473	475	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	532	first strand
Strand 2	D	560	562	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	540	546	first strand
Strand 2	D	623	632	parallel
Strand 3	D	607	616	anti-parallel
Strand 4	D	572	579	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	555	558	first strand
Strand 2	D	593	596	anti-parallel
Strand 3	D	585	587	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V5X

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V5X