Analysis of interatomic Contacts of Structural Units in PDB entry:
5V68

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V68 entry

There are 6 chains in PDB entry 5V68 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 15	PHE 312
B	LEU 8	PHE 312
C	HIS 5	PHE 312
D	ILE 16	ALA 309
E	LEU 8	PHE 312
F	LEU 8	ASP 313

There are 70 helices in PDB entry 5V68. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	48	Right-handed alpha
Helix 2	AA2	A	71	75	Right-handed 310
Helix 3	AA3	A	110	119	Right-handed 310
Helix 4	AA4	A	136	142	Right-handed alpha
Helix 5	AA5	A	145	150	Right-handed alpha
Helix 6	AA6	A	164	169	Right-handed 310
Helix 7	AA7	A	184	200	Right-handed alpha
Helix 8	AA8	A	207	215	Right-handed alpha
Helix 9	AA9	A	232	244	Right-handed alpha
Helix 10	AB1	A	268	281	Right-handed alpha
Helix 11	AB2	B	17	29	Right-handed alpha
Helix 12	AB3	B	43	49	Right-handed alpha
Helix 13	AB4	B	71	82	Right-handed alpha
Helix 14	AB5	B	82	90	Right-handed alpha
Helix 15	AB6	B	105	121	Right-handed alpha
Helix 16	AB7	B	137	153	Right-handed alpha
Helix 17	AB8	B	163	167	Right-handed alpha
Helix 18	AB9	B	176	200	Right-handed alpha
Helix 19	AC1	B	207	216	Right-handed alpha
Helix 20	AC2	B	232	244	Right-handed alpha
Helix 21	AC3	B	245	248	Right-handed 310
Helix 22	AC4	B	250	254	Right-handed 310
Helix 23	AC5	B	268	283	Right-handed alpha
Helix 24	AC6	B	297	300	Right-handed 310
Helix 25	AC7	C	17	30	Right-handed alpha
Helix 26	AC8	C	43	50	Right-handed alpha
Helix 27	AC9	C	71	82	Right-handed alpha
Helix 28	AD1	C	82	90	Right-handed alpha
Helix 29	AD2	C	105	122	Right-handed alpha
Helix 30	AD3	C	133	136	Right-handed 310
Helix 31	AD4	C	137	153	Right-handed alpha
Helix 32	AD5	C	185	200	Right-handed alpha
Helix 33	AD6	C	207	214	Right-handed alpha
Helix 34	AD7	C	238	244	Right-handed alpha
Helix 35	AD8	C	245	248	Right-handed 310
Helix 36	AD9	C	270	280	Right-handed alpha
Helix 37	AE1	D	76	80	Right-handed 310
Helix 38	AE2	D	144	155	Right-handed alpha
Helix 39	AE3	D	164	168	Right-handed 310
Helix 40	AE4	D	183	199	Right-handed alpha
Helix 41	AE5	D	207	215	Right-handed alpha
Helix 42	AE6	D	232	243	Right-handed alpha
Helix 43	AE7	D	268	283	Right-handed alpha
Helix 44	AE8	E	17	30	Right-handed alpha
Helix 45	AE9	E	45	49	Right-handed 310
Helix 46	AF1	E	73	82	Right-handed alpha
Helix 47	AF2	E	82	87	Right-handed alpha
Helix 48	AF3	E	105	121	Right-handed alpha
Helix 49	AF4	E	133	136	Right-handed 310
Helix 50	AF5	E	137	155	Right-handed alpha
Helix 51	AF6	E	163	167	Right-handed alpha
Helix 52	AF7	E	175	196	Right-handed alpha
Helix 53	AF8	E	207	216	Right-handed alpha
Helix 54	AF9	E	232	244	Right-handed alpha
Helix 55	AG1	E	245	248	Right-handed 310
Helix 56	AG2	E	268	281	Right-handed alpha
Helix 57	AG3	E	296	300	Right-handed 310
Helix 58	AG4	F	17	30	Right-handed alpha
Helix 59	AG5	F	44	49	Right-handed alpha
Helix 60	AG6	F	71	82	Right-handed alpha
Helix 61	AG7	F	82	91	Right-handed alpha
Helix 62	AG8	F	109	122	Right-handed alpha
Helix 63	AG9	F	137	155	Right-handed alpha
Helix 64	AH1	F	162	167	Right-handed 310
Helix 65	AH2	F	176	200	Right-handed alpha
Helix 66	AH3	F	207	216	Right-handed alpha
Helix 67	AH4	F	232	243	Right-handed alpha
Helix 68	AH5	F	249	254	Right-handed 310
Helix 69	AH6	F	268	277	Right-handed alpha
Helix 70	AH7	F	278	283	Right-handed alpha

There are 13 sheets in PDB entry 5V68. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	131	first strand
Strand 2	A	157	162	parallel
Strand 3	A	219	221	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	37	41	parallel
Strand 3	B	11	16	parallel
Strand 4	B	95	101	parallel
Strand 5	B	124	131	parallel
Strand 6	B	157	162	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	228	first strand
Strand 2	B	303	305	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand
Strand 2	B	257	258	parallel
Strand 3	B	308	309	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	293	295	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	57	first strand
Strand 2	C	36	41	parallel
Strand 3	C	11	16	parallel
Strand 4	C	95	100	parallel
Strand 5	C	124	131	parallel
Strand 6	C	157	162	parallel
Strand 7	C	219	224	parallel
Strand 8	C	307	310	anti-parallel
Strand 9	C	257	259	anti-parallel
Strand 10	C	289	290	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	157	162	parallel
Strand 3	D	219	221	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	224	first strand
Strand 2	D	303	308	anti-parallel
Strand 3	D	227	228	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	224	first strand
Strand 2	D	303	308	anti-parallel
Strand 3	D	258	263	anti-parallel
Strand 4	D	293	295	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	11	16	parallel
Strand 3	E	95	101	parallel
Strand 4	E	126	131	parallel
Strand 5	E	157	162	parallel
Strand 6	E	219	222	parallel
Strand 7	E	309	310	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	229	first strand
Strand 2	E	302	306	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	40	first strand
Strand 2	F	11	16	parallel
Strand 3	F	95	99	parallel
Strand 4	F	124	128	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	226	first strand
Strand 2	F	304	309	anti-parallel
Strand 3	F	257	263	anti-parallel
Strand 4	F	289	295	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V68

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V68