Analysis of interatomic Contacts of Structural Units in PDB entry:
5V6B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V6B entry

There are 2 chains in PDB entry 5V6B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 48ASP 327
B
 PRO 49ASP 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 5V6B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 54Right-handed 310
Helix 2
AA2
A
78 90Right-handed alpha
Helix 3
AA3
A
93 95Right-handed 310
Helix 4
AA4
A
108 112Right-handed 310
Helix 5
AA5
A
190 200Right-handed alpha
Helix 6
AA6
A
258 277Right-handed alpha
Helix 7
AA7
A
280 292Right-handed alpha
Helix 8
AA8
A
296 309Right-handed alpha
Helix 9
AA9
A
314 325Right-handed alpha
Helix 10
AB1
B
50 54Right-handed 310
Helix 11
AB2
B
78 90Right-handed alpha
Helix 12
AB3
B
93 95Right-handed 310
Helix 13
AB4
B
108 112Right-handed 310
Helix 14
AB5
B
164 169Right-handed alpha
Helix 15
AB6
B
190 200Right-handed alpha
Helix 16
AB7
B
258 277Right-handed alpha
Helix 17
AB8
B
280 292Right-handed alpha
Helix 18
AB9
B
296 309Right-handed alpha
Helix 19
AC1
B
310 312Right-handed 310
Helix 20
AC2
B
314 325Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5V6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
60 64anti-parallel
Strand 3
B
123 137parallel
Strand 4
A
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
60 64anti-parallel
Strand 3
B
123 137parallel
Strand 4
B
206 214anti-parallel
Strand 5
B
177 181anti-parallel
Strand 6
B
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
241 245anti-parallel
Strand 3
A
251 255anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
177 181anti-parallel
Strand 3
A
206 214anti-parallel
Strand 4
A
123 137anti-parallel
Strand 5
B
60 64parallel
Strand 6
B
71 73anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
177 181anti-parallel
Strand 3
A
206 214anti-parallel
Strand 4
A
123 137anti-parallel
Strand 5
B
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
155 160anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
241 244anti-parallel
Strand 3
B
252 255anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 149first strand
Strand 2
B
155 160anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il