Analysis of interatomic Contacts of Structural Units in PDB entry:
5V6C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V6C entry

There are 3 chains in PDB entry 5V6C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 820	TYR 957
B	ALA 820	TYR 957
C	ALA 820	TYR 957

There are no helices in PDB entry 5V6C

There are 11 sheets in PDB entry 5V6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	826	827	first strand
Strand 2	A	950	956	anti-parallel
Strand 3	A	940	945	anti-parallel
Strand 4	A	832	837	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	863	864	first strand
Strand 2	A	852	856	anti-parallel
Strand 3	A	843	848	anti-parallel
Strand 4	A	874	875	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	863	864	first strand
Strand 2	A	852	856	anti-parallel
Strand 3	A	843	848	anti-parallel
Strand 4	A	879	880	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	913	917	first strand
Strand 2	A	899	908	anti-parallel
Strand 3	A	884	894	anti-parallel
Strand 4	A	922	931	anti-parallel
Strand 5	B	922	931	anti-parallel
Strand 6	B	884	894	anti-parallel
Strand 7	B	899	908	anti-parallel
Strand 8	B	913	917	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	826	827	first strand
Strand 2	B	950	956	anti-parallel
Strand 3	B	940	945	anti-parallel
Strand 4	B	833	837	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	863	864	first strand
Strand 2	B	852	856	anti-parallel
Strand 3	B	843	848	anti-parallel
Strand 4	B	874	875	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	863	864	first strand
Strand 2	B	852	856	anti-parallel
Strand 3	B	843	848	anti-parallel
Strand 4	B	879	880	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	826	827	first strand
Strand 2	C	950	956	anti-parallel
Strand 3	C	940	945	anti-parallel
Strand 4	C	834	837	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	863	864	first strand
Strand 2	C	852	856	anti-parallel
Strand 3	C	843	848	anti-parallel
Strand 4	C	874	875	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	863	864	first strand
Strand 2	C	852	856	anti-parallel
Strand 3	C	843	848	anti-parallel
Strand 4	C	879	880	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	913	917	first strand
Strand 2	C	899	908	anti-parallel
Strand 3	C	884	894	anti-parallel
Strand 4	C	922	931	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V6C

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V6C