Analysis of interatomic Contacts of Structural Units in PDB entry:
5V6O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V6O entry

There are 5 chains in PDB entry 5V6O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 8	PHE 317
B	PRO 8	PHE 317
D	PRO 8	PHE 317
E	PRO 8	PHE 317
C	PRO 8	PHE 317

There are 38 helices in PDB entry 5V6O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	53	Right-handed 310
Helix 2	AA2	A	196	201	Right-handed alpha
Helix 3	AA3	A	201	214	Right-handed alpha
Helix 4	AA4	A	215	218	Right-handed 310
Helix 5	AA5	A	220	245	Right-handed alpha
Helix 6	AA6	A	253	281	Right-handed alpha
Helix 7	AA7	A	284	315	Right-handed alpha
Helix 8	AA8	B	50	53	Right-handed 310
Helix 9	AA9	B	115	119	Right-handed 310
Helix 10	AB1	B	196	201	Right-handed alpha
Helix 11	AB2	B	201	214	Right-handed alpha
Helix 12	AB3	B	215	218	Right-handed 310
Helix 13	AB4	B	220	245	Right-handed alpha
Helix 14	AB5	B	253	282	Right-handed alpha
Helix 15	AB6	B	284	315	Right-handed alpha
Helix 16	AB7	D	50	53	Right-handed 310
Helix 17	AB8	D	196	201	Right-handed alpha
Helix 18	AB9	D	201	214	Right-handed alpha
Helix 19	AC1	D	215	218	Right-handed 310
Helix 20	AC2	D	220	245	Right-handed alpha
Helix 21	AC3	D	253	281	Right-handed alpha
Helix 22	AC4	D	284	315	Right-handed alpha
Helix 23	AC5	E	50	53	Right-handed 310
Helix 24	AC6	E	145	148	Right-handed 310
Helix 25	AC7	E	196	201	Right-handed alpha
Helix 26	AC8	E	201	214	Right-handed alpha
Helix 27	AC9	E	215	218	Right-handed 310
Helix 28	AD1	E	220	245	Right-handed alpha
Helix 29	AD2	E	253	282	Right-handed alpha
Helix 30	AD3	E	284	316	Right-handed alpha
Helix 31	AD4	C	50	53	Right-handed 310
Helix 32	AD5	C	144	149	Right-handed alpha
Helix 33	AD6	C	196	201	Right-handed alpha
Helix 34	AD7	C	201	214	Right-handed alpha
Helix 35	AD8	C	215	218	Right-handed 310
Helix 36	AD9	C	220	245	Right-handed alpha
Helix 37	AE1	C	253	282	Right-handed alpha
Helix 38	AE2	C	284	315	Right-handed alpha

There are 11 sheets in PDB entry 5V6O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	36	48	anti-parallel
Strand 5	A	16	31	anti-parallel
Strand 6	A	139	143	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	133	anti-parallel
Strand 3	A	179	192	anti-parallel
Strand 4	A	160	176	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	36	48	anti-parallel
Strand 5	B	16	31	anti-parallel
Strand 6	B	139	143	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	133	anti-parallel
Strand 3	B	179	192	anti-parallel
Strand 4	B	160	176	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	86	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	36	48	anti-parallel
Strand 5	D	16	31	anti-parallel
Strand 6	D	139	143	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	133	anti-parallel
Strand 3	D	180	192	anti-parallel
Strand 4	D	160	175	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	65	first strand
Strand 2	E	86	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	36	48	anti-parallel
Strand 5	E	16	31	anti-parallel
Strand 6	E	139	143	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	133	anti-parallel
Strand 3	E	180	192	anti-parallel
Strand 4	E	160	175	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	86	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	36	48	anti-parallel
Strand 5	C	16	31	anti-parallel
Strand 6	C	139	143	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	133	anti-parallel
Strand 3	C	179	192	anti-parallel
Strand 4	C	160	167	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	133	anti-parallel
Strand 3	C	179	192	anti-parallel
Strand 4	C	172	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V6O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V6O