Analysis of interatomic Contacts of Structural Units in PDB entry:
5V6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V6T entry

There are 2 chains in PDB entry 5V6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1345ALA 1925
B
 PRO 56LYS 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5V6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1350 1360Right-handed alpha
Helix 2
AA2
A
1389 1393Right-handed 310
Helix 3
AA3
A
1402 1418Right-handed alpha
Helix 4
AA4
A
1419 1432Right-handed alpha
Helix 5
AA5
A
1437 1452Right-handed alpha
Helix 6
AA6
A
1455 1474Right-handed alpha
Helix 7
AA7
A
1478 1482Right-handed 310
Helix 8
AA8
A
1488 1509Right-handed alpha
Helix 9
AA9
A
1510 1526Right-handed alpha
Helix 10
AB1
A
1542 1546Right-handed 310
Helix 11
AB2
A
1579 1592Right-handed alpha
Helix 12
AB3
A
1596 1600Right-handed 310
Helix 13
AB4
A
1602 1604Right-handed 310
Helix 14
AB5
A
1700 1726Right-handed alpha
Helix 15
AB6
A
1734 1750Right-handed alpha
Helix 16
AB7
A
1755 1765Right-handed alpha
Helix 17
AB8
A
1771 1778Right-handed alpha
Helix 18
AB9
A
1779 1782Right-handed 310
Helix 19
AC1
A
1788 1806Right-handed alpha
Helix 20
AC2
A
1819 1823Right-handed 310
Helix 21
AC3
A
1827 1845Right-handed alpha
Helix 22
AC4
A
1849 1864Right-handed alpha
Helix 23
AC5
A
1865 1868Right-handed 310
Helix 24
AC6
A
1869 1884Right-handed alpha
Helix 25
AC7
A
1884 1895Right-handed alpha
Helix 26
AC8
A
1895 1901Right-handed alpha
Helix 27
AC9
A
1902 1916Right-handed alpha
Helix 28
AD1
A
1917 1921Right-handed 310
Helix 29
AD2
B
78 90Right-handed alpha
Helix 30
AD3
B
93 97Right-handed 310
Helix 31
AD4
B
190 201Right-handed alpha
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There are 5 sheets in PDB entry 5V6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1570 1575first strand
Strand 2
A
1555 1562anti-parallel
Strand 3
A
1649 1654parallel
Strand 4
A
1606 1611anti-parallel
Strand 5
A
1617 1619anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1628 1630first strand
Strand 2
A
1633 1635anti-parallel
Strand 3
A
1673 1674parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1923 1924first strand
Strand 2
B
145 149anti-parallel
Strand 3
B
155 160anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
71 74anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 137first strand
Strand 2
B
206 214anti-parallel
Strand 3
B
177 181anti-parallel
Strand 4
B
184 185anti-parallel
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