Analysis of interatomic Contacts of Structural Units in PDB entry:
5V72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V72 entry

There are 4 chains in PDB entry 5V72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 321
B	ARG 3	ARG 317
C	ARG 3	ASN 322
D	ARG 3	ALA 319

There are 63 helices in PDB entry 5V72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	20	Right-handed alpha
Helix 2	AA2	A	21	23	Right-handed 310
Helix 3	AA3	A	33	37	Right-handed 310
Helix 4	AA4	A	38	44	Right-handed 310
Helix 5	AA5	A	54	59	Right-handed alpha
Helix 6	AA6	A	78	85	Right-handed alpha
Helix 7	AA7	A	96	114	Right-handed alpha
Helix 8	AA8	A	114	124	Right-handed alpha
Helix 9	AA9	A	125	130	Right-handed alpha
Helix 10	AB1	A	150	164	Right-handed alpha
Helix 11	AB2	A	186	194	Right-handed alpha
Helix 12	AB3	A	212	220	Right-handed alpha
Helix 13	AB4	A	235	245	Right-handed alpha
Helix 14	AB5	A	263	269	Right-handed alpha
Helix 15	AB6	A	282	304	Right-handed alpha
Helix 16	AB7	B	13	20	Right-handed alpha
Helix 17	AB8	B	21	23	Right-handed 310
Helix 18	AB9	B	33	37	Right-handed 310
Helix 19	AC1	B	38	44	Right-handed 310
Helix 20	AC2	B	54	59	Right-handed alpha
Helix 21	AC3	B	78	85	Right-handed alpha
Helix 22	AC4	B	96	114	Right-handed alpha
Helix 23	AC5	B	114	124	Right-handed alpha
Helix 24	AC6	B	125	131	Right-handed alpha
Helix 25	AC7	B	150	164	Right-handed alpha
Helix 26	AC8	B	186	194	Right-handed alpha
Helix 27	AC9	B	212	220	Right-handed alpha
Helix 28	AD1	B	230	234	Right-handed 310
Helix 29	AD2	B	235	245	Right-handed alpha
Helix 30	AD3	B	263	269	Right-handed alpha
Helix 31	AD4	B	282	304	Right-handed alpha
Helix 32	AD5	C	13	20	Right-handed alpha
Helix 33	AD6	C	21	23	Right-handed 310
Helix 34	AD7	C	33	37	Right-handed 310
Helix 35	AD8	C	38	44	Right-handed 310
Helix 36	AD9	C	54	59	Right-handed alpha
Helix 37	AE1	C	78	85	Right-handed alpha
Helix 38	AE2	C	96	114	Right-handed alpha
Helix 39	AE3	C	114	124	Right-handed alpha
Helix 40	AE4	C	125	130	Right-handed alpha
Helix 41	AE5	C	150	164	Right-handed alpha
Helix 42	AE6	C	186	194	Right-handed alpha
Helix 43	AE7	C	212	220	Right-handed alpha
Helix 44	AE8	C	230	234	Right-handed 310
Helix 45	AE9	C	235	245	Right-handed alpha
Helix 46	AF1	C	263	269	Right-handed alpha
Helix 47	AF2	C	282	304	Right-handed alpha
Helix 48	AF3	D	13	20	Right-handed alpha
Helix 49	AF4	D	21	23	Right-handed 310
Helix 50	AF5	D	33	37	Right-handed 310
Helix 51	AF6	D	38	44	Right-handed 310
Helix 52	AF7	D	54	59	Right-handed alpha
Helix 53	AF8	D	78	85	Right-handed alpha
Helix 54	AF9	D	96	114	Right-handed alpha
Helix 55	AG1	D	114	124	Right-handed alpha
Helix 56	AG2	D	125	130	Right-handed alpha
Helix 57	AG3	D	150	164	Right-handed alpha
Helix 58	AG4	D	186	194	Right-handed alpha
Helix 59	AG5	D	212	220	Right-handed alpha
Helix 60	AG6	D	230	234	Right-handed 310
Helix 61	AG7	D	235	245	Right-handed alpha
Helix 62	AG8	D	263	269	Right-handed alpha
Helix 63	AG9	D	282	304	Right-handed alpha

There are 8 sheets in PDB entry 5V72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	29	first strand
Strand 2	A	5	9	parallel
Strand 3	A	46	49	parallel
Strand 4	A	66	69	parallel
Strand 5	A	88	90	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	184	first strand
Strand 2	A	167	171	parallel
Strand 3	A	144	148	parallel
Strand 4	A	196	199	parallel
Strand 5	A	224	227	parallel
Strand 6	A	250	253	parallel
Strand 7	A	272	274	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	5	9	parallel
Strand 3	B	46	49	parallel
Strand 4	B	66	69	parallel
Strand 5	B	88	90	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	167	171	parallel
Strand 3	B	144	148	parallel
Strand 4	B	196	199	parallel
Strand 5	B	224	227	parallel
Strand 6	B	250	253	parallel
Strand 7	B	272	274	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	29	first strand
Strand 2	C	5	9	parallel
Strand 3	C	46	49	parallel
Strand 4	C	66	69	parallel
Strand 5	C	88	90	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	184	first strand
Strand 2	C	167	171	parallel
Strand 3	C	144	148	parallel
Strand 4	C	196	199	parallel
Strand 5	C	224	227	parallel
Strand 6	C	250	253	parallel
Strand 7	C	272	274	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	29	first strand
Strand 2	D	5	9	parallel
Strand 3	D	46	49	parallel
Strand 4	D	66	69	parallel
Strand 5	D	88	90	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	184	first strand
Strand 2	D	167	171	parallel
Strand 3	D	144	148	parallel
Strand 4	D	196	199	parallel
Strand 5	D	224	227	parallel
Strand 6	D	250	253	parallel
Strand 7	D	272	274	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V72

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V72