Analysis of interatomic Contacts of Structural Units in PDB entry:
5V7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V7J entry

There are 6 chains in PDB entry 5V7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLU 32	GLY 507
B	ALA 512	ASP 664
L	SER 6	THR 210
H	GLN 1	PRO 211
D	GLU 1	VAL 222
E	SER 2	GLU 214

There are 29 helices in PDB entry 5V7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	99	116	Right-handed alpha
Helix 2	AA2	G	177	179	Right-handed 310
Helix 3	AA3	G	195	198	Right-handed 310
Helix 4	AA4	G	335	350	Right-handed alpha
Helix 5	AA5	G	351	353	Right-handed 310
Helix 6	AA6	G	425	429	Right-handed 310
Helix 7	AA7	G	476	481	Right-handed alpha
Helix 8	AA8	B	529	536	Right-handed alpha
Helix 9	AA9	B	537	546	Right-handed alpha
Helix 10	AB1	B	569	597	Right-handed alpha
Helix 11	AB2	B	611	615	Right-handed 310
Helix 12	AB3	B	619	624	Right-handed alpha
Helix 13	AB4	B	628	636	Right-handed alpha
Helix 14	AB5	B	638	643	Right-handed alpha
Helix 15	AB6	B	644	649	Right-handed alpha
Helix 16	AB7	B	656	662	Right-handed alpha
Helix 17	AB8	L	79	83	Right-handed 310
Helix 18	AB9	L	125	129	Right-handed 310
Helix 19	AC1	L	182	189	Right-handed alpha
Helix 20	AC2	H	60	64	Right-handed 310
Helix 21	AC3	H	83	87	Right-handed 310
Helix 22	AC4	H	100	100	Right-handed 310
Helix 23	AC5	H	154	156	Right-handed 310
Helix 24	AC6	D	60	64	Right-handed 310
Helix 25	AC7	D	83	87	Right-handed 310
Helix 26	AC8	D	154	158	Right-handed 310
Helix 27	AC9	D	217	222	Right-handed alpha
Helix 28	AD1	E	81	85	Right-handed 310
Helix 29	AD2	E	186	190	Right-handed 310

There are 33 sheets in PDB entry 5V7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	494	499	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	B	603	604	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	489	491	anti-parallel
Strand 3	G	223	224	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	216	218	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	86	first strand
Strand 2	G	242	244	anti-parallel
Strand 3	G	227	228	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	133	first strand
Strand 2	G	155	162	anti-parallel
Strand 3	G	169	174	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	183	first strand
Strand 2	G	191	193	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	449	456	anti-parallel
Strand 3	G	284	287	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	449	456	anti-parallel
Strand 3	G	468	469	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	413	415	first strand
Strand 2	G	330	334	anti-parallel
Strand 3	G	295	297	anti-parallel
Strand 4	G	444	445	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	303	308	first strand
Strand 2	G	316	321	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	378	first strand
Strand 2	G	381	385	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	423	424	first strand
Strand 2	G	434	435	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	14	first strand
Strand 2	L	105	107	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	45	first strand
Strand 2	L	37	39	anti-parallel
Strand 3	L	85	86	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	118	first strand
Strand 2	L	135	140	anti-parallel
Strand 3	L	173	178	anti-parallel
Strand 4	L	161	162	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	118	first strand
Strand 2	L	135	140	anti-parallel
Strand 3	L	173	178	anti-parallel
Strand 4	L	166	167	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	147	151	anti-parallel
Strand 3	L	192	196	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	20	23	anti-parallel
Strand 3	H	77	81	anti-parallel
Strand 4	H	68	69	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	47	first strand
Strand 2	H	34	40	anti-parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	100	100	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	47	first strand
Strand 2	H	34	40	anti-parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	105	107	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	122	first strand
Strand 2	H	133	140	anti-parallel
Strand 3	H	176	183	anti-parallel
Strand 4	H	161	164	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	152	first strand
Strand 2	H	193	198	anti-parallel
Strand 3	H	203	208	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	79	81	anti-parallel
Strand 4	D	68	70	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	44	47	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	72	first strand
Strand 2	D	73	76	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	130	first strand
Strand 2	D	135	140	anti-parallel
Strand 3	D	180	185	anti-parallel
Strand 4	D	163	165	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	22	23	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	92	93	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	39	first strand
Strand 2	E	88	89	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	55	56	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	122	first strand
Strand 2	E	135	138	anti-parallel
Strand 3	E	180	183	anti-parallel
Strand 4	E	163	165	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	143	first strand
Strand 2	E	176	178	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	197	200	anti-parallel
Strand 3	E	205	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V7J