Analysis of interatomic Contacts of Structural Units in PDB entry:
5V7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V7P entry

There are 2 chains in PDB entry 5V7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ILE 281
D
 ALA 0THR 94
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5V7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 30Right-handed alpha
Helix 2
AA2
A
34 57Right-handed alpha
Helix 3
AA3
A
58 85Right-handed alpha
Helix 4
AA4
A
89 114Right-handed alpha
Helix 5
AA5
A
115 118Right-handed 310
Helix 6
AA6
A
119 124Right-handed 310
Helix 7
AA7
A
128 149Right-handed alpha
Helix 8
AA8
A
149 154Right-handed alpha
Helix 9
AA9
A
155 181Right-handed alpha
Helix 10
AB1
A
182 184Right-handed 310
Helix 11
AB2
A
202 207Right-handed alpha
Helix 12
AB3
A
209 226Right-handed alpha
Helix 13
AB4
A
230 259Right-handed alpha
Helix 14
AB5
A
259 269Right-handed alpha
Helix 15
AB6
D
76 80Right-handed 310
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There are 2 sheets in PDB entry 5V7P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 14first strand
Strand 2
D
17 23anti-parallel
Strand 3
D
56 59anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 51first strand
Strand 2
D
31 38anti-parallel
Strand 3
D
67 75anti-parallel
Strand 4
D
88 93anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il