Analysis of interatomic Contacts of Structural Units in PDB entry:
5V7Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V7Q entry

There are 31 chains in PDB entry 5V7Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ALA 2	PHE 54
1	VAL 7	THR 54
2	GLY 4	LEU 45
3	PRO 2	ASN 63
4	VAL 1	GLY 37
6	MET 1	TYR 45
A	A 5	U 3132
B	U 1	A 115
C	ALA 2	ARG 273
D	ALA 2	ARG 214
E	LEU 9	THR 215
F	LYS 12	GLY 181
G	ARG 3	LYS 176
H	MET 1	ALA 47
J	PRO 2	GLN 147
K	ILE 2	LEU 122
L	LYS 4	GLU 145
M	LEU 2	GLU 135
N	PRO 2	ARG 117
O	ALA 7	PHE 122
P	MET 1	LYS 112
Q	ALA 2	ALA 123
R	TYR 5	GLY 102
S	GLU 9	PRO 121
T	THR 3	ALA 100
U	MET 1	ASP 104
V	SER 6	ALA 182
W	ASN 12	THR 85
X	MET 1	ARG 63
Y	GLY 4	LEU 68
Z	SER 2	GLN 60

There are 84 helices in PDB entry 5V7Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	9	19	Right-handed alpha
Helix 2	AA2	0	40	42	Right-handed 310
Helix 3	AA3	0	43	50	Right-handed alpha
Helix 4	AA4	2	11	20	Right-handed alpha
Helix 5	AA5	2	20	25	Right-handed alpha
Helix 6	AA6	2	27	41	Right-handed alpha
Helix 7	AA7	3	7	12	Right-handed alpha
Helix 8	AA8	3	37	45	Right-handed alpha
Helix 9	AA9	3	54	63	Right-handed alpha
Helix 10	AB1	6	38	42	Right-handed 310
Helix 11	AB2	C	134	136	Right-handed 310
Helix 12	AB3	C	200	204	Right-handed 310
Helix 13	AB4	C	208	216	Right-handed alpha
Helix 14	AB5	C	222	226	Right-handed 310
Helix 15	AB6	D	41	46	Right-handed alpha
Helix 16	AB7	D	63	74	Right-handed alpha
Helix 17	AB8	D	102	106	Right-handed 310
Helix 18	AB9	D	125	130	Right-handed alpha
Helix 19	AC1	E	27	31	Right-handed 310
Helix 20	AC2	E	36	52	Right-handed alpha
Helix 21	AC3	E	109	127	Right-handed alpha
Helix 22	AC4	E	143	155	Right-handed alpha
Helix 23	AC5	E	185	189	Right-handed 310
Helix 24	AC6	E	191	197	Right-handed alpha
Helix 25	AC7	E	203	214	Right-handed alpha
Helix 26	AC8	F	13	27	Right-handed alpha
Helix 27	AC9	F	47	51	Right-handed 310
Helix 28	AD1	F	54	68	Right-handed alpha
Helix 29	AD2	F	99	109	Right-handed alpha
Helix 30	AD3	F	169	180	Right-handed alpha
Helix 31	AD4	G	3	7	Right-handed 310
Helix 32	AD5	G	60	82	Right-handed alpha
Helix 33	AD6	G	138	149	Right-handed alpha
Helix 34	AD7	H	42	47	Right-handed alpha
Helix 35	AD8	J	24	38	Right-handed alpha
Helix 36	AD9	J	58	62	Right-handed 310
Helix 37	AE1	J	65	70	Right-handed alpha
Helix 38	AE2	J	89	96	Right-handed alpha
Helix 39	AE3	J	96	109	Right-handed alpha
Helix 40	AE4	J	112	120	Right-handed alpha
Helix 41	AE5	K	113	118	Right-handed alpha
Helix 42	AE6	L	4	8	Right-handed 310
Helix 43	AE7	L	38	43	Right-handed alpha
Helix 44	AE8	L	55	60	Right-handed alpha
Helix 45	AE9	L	79	86	Right-handed alpha
Helix 46	AF1	L	93	100	Right-handed alpha
Helix 47	AF2	L	129	140	Right-handed alpha
Helix 48	AF3	M	44	58	Right-handed alpha
Helix 49	AF4	M	110	125	Right-handed alpha
Helix 50	AF5	N	13	32	Right-handed alpha
Helix 51	AF6	N	38	58	Right-handed alpha
Helix 52	AF7	N	59	68	Right-handed alpha
Helix 53	AF8	N	73	82	Right-handed alpha
Helix 54	AF9	N	82	87	Right-handed alpha
Helix 55	AG1	N	88	90	Right-handed 310
Helix 56	AG2	O	8	21	Right-handed alpha
Helix 57	AG3	O	62	66	Right-handed 310
Helix 58	AG4	O	71	91	Right-handed alpha
Helix 59	AG5	O	106	118	Right-handed alpha
Helix 60	AG6	P	2	9	Right-handed alpha
Helix 61	AG7	P	10	12	Right-handed 310
Helix 62	AG8	P	52	55	Right-handed 310
Helix 63	AG9	Q	6	22	Right-handed alpha
Helix 64	AH1	Q	31	72	Right-handed alpha
Helix 65	AH2	Q	75	87	Right-handed alpha
Helix 66	AH3	Q	91	102	Right-handed alpha
Helix 67	AH4	Q	102	117	Right-handed alpha
Helix 68	AH5	R	52	57	Right-handed alpha
Helix 69	AH6	S	23	32	Right-handed alpha
Helix 70	AH7	S	33	35	Right-handed 310
Helix 71	AH8	S	38	48	Right-handed alpha
Helix 72	AH9	S	54	71	Right-handed alpha
Helix 73	AI1	S	99	101	Right-handed 310
Helix 74	AI2	T	17	23	Right-handed alpha
Helix 75	AI3	T	24	26	Right-handed 310
Helix 76	AI4	T	38	51	Right-handed alpha
Helix 77	AI5	V	18	28	Right-handed alpha
Helix 78	AI6	V	52	57	Right-handed alpha
Helix 79	AI7	X	53	58	Right-handed alpha
Helix 80	AI8	Y	6	12	Right-handed alpha
Helix 81	AI9	Y	15	39	Right-handed alpha
Helix 82	AJ1	Y	45	66	Right-handed alpha
Helix 83	AJ2	Z	16	26	Right-handed alpha
Helix 84	AJ3	Z	42	50	Right-handed alpha

There are 49 sheets in PDB entry 5V7Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	21	25	first strand
Strand 2	1	11	15	anti-parallel
Strand 3	1	47	52	anti-parallel
Strand 4	1	38	42	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	14	16	first strand
Strand 2	3	22	25	anti-parallel
Strand 3	3	47	49	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	3	4	first strand
Strand 2	4	35	36	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	15	19	first strand
Strand 2	4	22	26	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	11	12	first strand
Strand 2	6	25	26	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	15	16	first strand
Strand 2	6	35	36	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	17	19	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	62	63	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	106	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	77	83	anti-parallel
Strand 4	C	116	117	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	132	first strand
Strand 2	C	190	193	anti-parallel
Strand 3	C	142	143	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	153	155	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	168	first strand
Strand 2	C	172	176	anti-parallel
Strand 3	C	182	186	anti-parallel
Strand 4	C	268	270	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	17	first strand
Strand 2	D	23	30	anti-parallel
Strand 3	D	191	195	anti-parallel
Strand 4	D	174	186	anti-parallel
Strand 5	D	111	117	anti-parallel
Strand 6	D	205	210	anti-parallel
Strand 7	D	5	17	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	40	first strand
Strand 2	D	49	54	anti-parallel
Strand 3	D	80	85	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	168	170	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	132	first strand
Strand 2	E	200	202	parallel
Strand 3	E	160	163	parallel
Strand 4	E	181	184	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	76	first strand
Strand 2	F	91	98	anti-parallel
Strand 3	F	37	45	anti-parallel
Strand 4	F	160	166	anti-parallel
Strand 5	F	135	136	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	19	first strand
Strand 2	G	23	26	anti-parallel
Strand 3	G	33	36	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	45	first strand
Strand 2	G	51	54	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	128	first strand
Strand 2	G	131	136	anti-parallel
Strand 3	G	84	90	anti-parallel
Strand 4	G	163	164	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	105	106	first strand
Strand 2	G	114	115	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	36	38	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	122	124	first strand
Strand 2	J	53	57	parallel
Strand 3	J	15	19	parallel
Strand 4	J	137	139	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	73	77	first strand
Strand 2	J	84	88	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	92	93	first strand
Strand 2	K	83	88	anti-parallel
Strand 3	K	57	64	anti-parallel
Strand 4	K	38	46	anti-parallel
Strand 5	K	16	24	anti-parallel
Strand 6	K	7	10	anti-parallel
Strand 7	K	83	88	parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	70	first strand
Strand 2	K	76	79	anti-parallel
Strand 3	P	68	74	anti-parallel
Strand 4	P	57	63	anti-parallel
Strand 5	P	38	50	anti-parallel
Strand 6	P	24	31	anti-parallel
Strand 7	P	80	87	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	75	78	first strand
Strand 2	L	109	112	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	40	43	first strand
Strand 2	M	92	97	anti-parallel
Strand 3	M	72	74	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	65	66	first strand
Strand 2	M	104	105	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	110	115	anti-parallel
Strand 3	N	95	100	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	54	59	first strand
Strand 2	O	42	47	anti-parallel
Strand 3	O	32	37	anti-parallel
Strand 4	O	96	97	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	13	17	first strand
Strand 2	R	6	10	anti-parallel
Strand 3	R	40	43	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	21	26	first strand
Strand 2	R	95	100	anti-parallel
Strand 3	R	61	65	anti-parallel
Strand 4	R	35	38	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	74	79	first strand
Strand 2	R	86	91	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	13	20	first strand
Strand 2	S	111	119	anti-parallel
Strand 3	S	79	88	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	92	97	first strand
Strand 2	S	103	108	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	11	14	first strand
Strand 2	T	28	33	anti-parallel
Strand 3	T	80	86	anti-parallel
Strand 4	T	54	61	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	65	67	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	20	27	anti-parallel
Strand 4	U	8	11	anti-parallel
Strand 5	U	71	73	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	83	84	first strand
Strand 2	U	97	98	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	7	10	first strand
Strand 2	V	65	69	parallel
Strand 3	V	72	77	anti-parallel
Strand 4	V	90	97	anti-parallel
Strand 5	V	31	35	parallel
Strand 6	V	41	45	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	7	10	first strand
Strand 2	V	65	69	parallel
Strand 3	V	72	77	anti-parallel
Strand 4	V	90	97	anti-parallel
Strand 5	V	81	83	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	128	132	first strand
Strand 2	V	105	111	anti-parallel
Strand 3	V	142	143	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	121	124	first strand
Strand 2	V	177	180	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	22	23	first strand
Strand 2	W	38	39	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	30	31	first strand
Strand 2	W	65	66	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	51	52	first strand
Strand 2	W	60	61	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	13	16	first strand
Strand 2	X	26	29	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	33	36	first strand
Strand 2	X	49	52	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	35	37	first strand
Strand 2	Z	4	8	anti-parallel
Strand 3	Z	54	58	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V7Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V7Q