Analysis of interatomic Contacts of Structural Units in PDB entry:
5V7X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V7X entry

There are 2 chains in PDB entry 5V7X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5PHE 734
B
 ALA 1LYS 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5V7X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 23Right-handed 310
Helix 2
AA2
A
27 38Right-handed alpha
Helix 3
AA3
A
39 42Right-handed 310
Helix 4
AA4
A
65 72Right-handed alpha
Helix 5
AA5
A
84 99Right-handed alpha
Helix 6
AA6
A
113 129Right-handed alpha
Helix 7
AA7
A
131 136Right-handed alpha
Helix 8
AA8
A
138 145Right-handed alpha
Helix 9
AA9
A
145 153Right-handed alpha
Helix 10
AB1
A
192 197Right-handed alpha
Helix 11
AB2
A
205 215Right-handed alpha
Helix 12
AB3
A
216 222Right-handed alpha
Helix 13
AB4
A
228 232Right-handed 310
Helix 14
AB5
A
246 262Right-handed alpha
Helix 15
AB6
A
264 281Right-handed alpha
Helix 16
AB7
A
303 314Right-handed alpha
Helix 17
AB8
A
316 324Right-handed alpha
Helix 18
AB9
A
341 373Right-handed alpha
Helix 19
AC1
A
398 430Right-handed alpha
Helix 20
AC2
A
442 451Right-handed alpha
Helix 21
AC3
A
455 465Right-handed alpha
Helix 22
AC4
A
471 483Right-handed alpha
Helix 23
AC5
A
535 544Right-handed alpha
Helix 24
AC6
A
549 554Right-handed alpha
Helix 25
AC7
A
555 558Right-handed 310
Helix 26
AC8
A
569 587Right-handed alpha
Helix 27
AC9
A
608 619Right-handed alpha
Helix 28
AD1
A
620 630Right-handed alpha
Helix 29
AD2
A
638 646Right-handed alpha
Helix 30
AD3
A
647 649Right-handed 310
Helix 31
AD4
A
659 669Right-handed alpha
Helix 32
AD5
A
674 676Right-handed 310
Helix 33
AD6
A
689 728Right-handed alpha
Helix 34
AD7
B
5 20Right-handed alpha
Helix 35
AD8
B
28 31Right-handed 310
Helix 36
AD9
B
32 38Right-handed alpha
Helix 37
AE1
B
44 56Right-handed alpha
Helix 38
AE2
B
64 73Right-handed alpha
Helix 39
AE3
B
74 78Right-handed 310
Helix 40
AE4
B
82 91Right-handed alpha
Helix 41
AE5
B
102 112Right-handed alpha
Helix 42
AE6
B
117 127Right-handed alpha
Helix 43
AE7
B
138 147Right-handed alpha
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There are 7 sheets in PDB entry 5V7X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
589 596parallel
Strand 4
A
102 107parallel
Strand 5
A
380 387parallel
Strand 6
A
167 175anti-parallel
Strand 7
A
180 188anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
163 164anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
298 300anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
338 339anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 491first strand
Strand 2
A
509 514anti-parallel
Strand 3
A
517 522anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 637first strand
Strand 2
A
684 687anti-parallel
Strand 3
A
678 680anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
135 137anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il