Analysis of interatomic Contacts of Structural Units in PDB entry:
5V84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V84 entry

There are 4 chains in PDB entry 5V84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 437HIS 538
B
 ASP 438HIS 538
C
 ASP 437HIS 538
D
 ASP 438HIS 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5V84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
438 453Right-handed alpha
Helix 2
AA2
A
456 460Right-handed 310
Helix 3
AA3
A
470 475Right-handed alpha
Helix 4
AA4
A
480 490Right-handed alpha
Helix 5
AA5
A
495 515Right-handed alpha
Helix 6
AA6
A
518 538Right-handed alpha
Helix 7
AA7
B
439 453Right-handed alpha
Helix 8
AA8
B
456 460Right-handed 310
Helix 9
AA9
B
470 475Right-handed alpha
Helix 10
AB1
B
480 490Right-handed alpha
Helix 11
AB2
B
495 515Right-handed alpha
Helix 12
AB3
B
518 538Right-handed alpha
Helix 13
AB4
C
438 453Right-handed alpha
Helix 14
AB5
C
456 460Right-handed 310
Helix 15
AB6
C
470 475Right-handed alpha
Helix 16
AB7
C
480 490Right-handed alpha
Helix 17
AB8
C
495 515Right-handed alpha
Helix 18
AB9
C
518 538Right-handed alpha
Helix 19
AC1
D
439 453Right-handed alpha
Helix 20
AC2
D
456 460Right-handed 310
Helix 21
AC3
D
470 475Right-handed alpha
Helix 22
AC4
D
480 490Right-handed alpha
Helix 23
AC5
D
495 515Right-handed alpha
Helix 24
AC6
D
518 538Right-handed alpha
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There are no sheets in PDB entry 5V84
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il