Analysis of interatomic Contacts of Structural Units in PDB entry:
5V85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V85 entry

There are 2 chains in PDB entry 5V85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 19VAL 298
B
 LYS 18VAL 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5V85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 38Right-handed alpha
Helix 2
AA2
A
63 74Right-handed alpha
Helix 3
AA3
A
84 93Right-handed alpha
Helix 4
AA4
A
110 127Right-handed alpha
Helix 5
AA5
A
140 156Right-handed alpha
Helix 6
AA6
A
159 174Right-handed alpha
Helix 7
AA7
A
183 189Right-handed alpha
Helix 8
AA8
A
225 241Right-handed alpha
Helix 9
AA9
A
243 246Right-handed 310
Helix 10
AB1
A
256 271Right-handed alpha
Helix 11
AB2
A
282 290Right-handed alpha
Helix 12
AB3
B
33 38Right-handed alpha
Helix 13
AB4
B
63 74Right-handed alpha
Helix 14
AB5
B
84 93Right-handed alpha
Helix 15
AB6
B
110 126Right-handed alpha
Helix 16
AB7
B
140 156Right-handed alpha
Helix 17
AB8
B
159 174Right-handed alpha
Helix 18
AB9
B
183 189Right-handed alpha
Helix 19
AC1
B
225 241Right-handed alpha
Helix 20
AC2
B
243 246Right-handed 310
Helix 21
AC3
B
256 271Right-handed alpha
Helix 22
AC4
B
282 290Right-handed alpha
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There are 6 sheets in PDB entry 5V85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
22 27parallel
Strand 3
A
98 103parallel
Strand 4
A
130 135parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
48 51anti-parallel
Strand 3
A
79 81anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 224first strand
Strand 2
A
205 211anti-parallel
Strand 3
A
175 179anti-parallel
Strand 4
A
294 298anti-parallel
Strand 5
A
248 253anti-parallel
Strand 6
A
275 280parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
22 27parallel
Strand 3
B
98 103parallel
Strand 4
B
130 135parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
48 51anti-parallel
Strand 3
B
79 81anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 224first strand
Strand 2
B
205 211anti-parallel
Strand 3
B
175 179anti-parallel
Strand 4
B
294 298anti-parallel
Strand 5
B
248 253anti-parallel
Strand 6
B
275 280parallel
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