Analysis of interatomic Contacts of Structural Units in PDB entry:
5V87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V87 entry

There are 2 chains in PDB entry 5V87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 794PHE 941
B
 HIS 794LEU 944
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5V87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
797 804Right-handed alpha
Helix 2
AA2
A
809 828Right-handed alpha
Helix 3
AA3
A
832 849Right-handed alpha
Helix 4
AA4
A
851 869Right-handed alpha
Helix 5
AA5
A
871 888Right-handed alpha
Helix 6
AA6
A
890 907Right-handed alpha
Helix 7
AA7
A
910 923Right-handed alpha
Helix 8
AA8
A
931 941Right-handed alpha
Helix 9
AA9
B
797 804Right-handed alpha
Helix 10
AB1
B
809 828Right-handed alpha
Helix 11
AB2
B
832 849Right-handed alpha
Helix 12
AB3
B
851 868Right-handed alpha
Helix 13
AB4
B
871 888Right-handed alpha
Helix 14
AB5
B
890 907Right-handed alpha
Helix 15
AB6
B
910 923Right-handed alpha
Helix 16
AB7
B
931 939Right-handed alpha
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There are no sheets in PDB entry 5V87
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il