Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V8C entry

There is 1 chain in PDB entry 5V8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 78ALA 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5V8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
164 168Right-handed 310
Helix 2
AA2
A
170 183Right-handed alpha
Helix 3
AA3
A
193 204Right-handed alpha
Helix 4
AA4
A
233 243Right-handed alpha
Helix 5
AA5
A
258 286Right-handed alpha
Helix 6
AA6
A
287 301Right-handed alpha
Helix 7
AA7
A
309 326Right-handed alpha
Helix 8
AA8
A
338 342Right-handed 310
Helix 9
AA9
A
348 358Right-handed alpha
Helix 10
AB1
A
361 363Right-handed 310
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There are 5 sheets in PDB entry 5V8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
303 305parallel
Strand 3
A
188 192anti-parallel
Strand 4
A
100 106parallel
Strand 5
A
128 137anti-parallel
Strand 6
A
142 147anti-parallel
Strand 7
A
329 333parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
365 366anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
160 162anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
228 229anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
215 217anti-parallel
Strand 3
A
247 250anti-parallel
Strand 4
A
253 255anti-parallel
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