Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V8D entry

There are 6 chains in PDB entry 5V8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 93	ASP 336
A	PHE 338	LYS 396
B	ILE 80	ASP 336
B	PHE 338	LYS 396
C	ILE 83	LYS 396
D	ASN 84	LYS 396

There are 56 helices in PDB entry 5V8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	110	131	Right-handed alpha
Helix 2	AA2	A	142	147	Right-handed alpha
Helix 3	AA3	A	148	151	Right-handed 310
Helix 4	AA4	A	158	170	Right-handed alpha
Helix 5	AA5	A	179	187	Right-handed alpha
Helix 6	AA6	A	188	194	Right-handed alpha
Helix 7	AA7	A	204	223	Right-handed alpha
Helix 8	AA8	A	232	234	Right-handed 310
Helix 9	AA9	A	291	295	Right-handed 310
Helix 10	AB1	A	306	311	Right-handed alpha
Helix 11	AB2	A	337	341	Right-handed 310
Helix 12	AB3	A	342	349	Right-handed alpha
Helix 13	AB4	A	365	373	Right-handed alpha
Helix 14	AB5	A	389	393	Right-handed 310
Helix 15	AB6	B	110	131	Right-handed alpha
Helix 16	AB7	B	142	147	Right-handed alpha
Helix 17	AB8	B	148	151	Right-handed 310
Helix 18	AB9	B	158	170	Right-handed alpha
Helix 19	AC1	B	179	187	Right-handed alpha
Helix 20	AC2	B	188	194	Right-handed alpha
Helix 21	AC3	B	204	223	Right-handed alpha
Helix 22	AC4	B	232	234	Right-handed 310
Helix 23	AC5	B	291	295	Right-handed 310
Helix 24	AC6	B	306	311	Right-handed alpha
Helix 25	AC7	B	337	341	Right-handed 310
Helix 26	AC8	B	342	349	Right-handed alpha
Helix 27	AC9	B	365	373	Right-handed alpha
Helix 28	AD1	B	389	393	Right-handed 310
Helix 29	AD2	C	110	131	Right-handed alpha
Helix 30	AD3	C	142	147	Right-handed alpha
Helix 31	AD4	C	148	151	Right-handed 310
Helix 32	AD5	C	158	170	Right-handed alpha
Helix 33	AD6	C	179	187	Right-handed alpha
Helix 34	AD7	C	188	194	Right-handed alpha
Helix 35	AD8	C	204	223	Right-handed alpha
Helix 36	AD9	C	232	234	Right-handed 310
Helix 37	AE1	C	291	295	Right-handed 310
Helix 38	AE2	C	306	311	Right-handed alpha
Helix 39	AE3	C	337	341	Right-handed 310
Helix 40	AE4	C	342	348	Right-handed alpha
Helix 41	AE5	C	365	373	Right-handed alpha
Helix 42	AE6	C	389	393	Right-handed 310
Helix 43	AE7	D	110	131	Right-handed alpha
Helix 44	AE8	D	142	147	Right-handed alpha
Helix 45	AE9	D	148	151	Right-handed 310
Helix 46	AF1	D	158	170	Right-handed alpha
Helix 47	AF2	D	179	187	Right-handed alpha
Helix 48	AF3	D	188	194	Right-handed alpha
Helix 49	AF4	D	204	223	Right-handed alpha
Helix 50	AF5	D	232	234	Right-handed 310
Helix 51	AF6	D	291	295	Right-handed 310
Helix 52	AF7	D	306	311	Right-handed alpha
Helix 53	AF8	D	337	341	Right-handed 310
Helix 54	AF9	D	342	348	Right-handed alpha
Helix 55	AG1	D	365	373	Right-handed alpha
Helix 56	AG2	D	389	393	Right-handed 310

There are 12 sheets in PDB entry 5V8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	101	103	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	178	first strand
Strand 2	A	134	139	parallel
Strand 3	A	377	381	parallel
Strand 4	A	330	335	parallel
Strand 5	A	352	356	parallel
Strand 6	A	317	321	anti-parallel
Strand 7	A	278	282	anti-parallel
Strand 8	A	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	270	first strand
Strand 2	A	236	246	anti-parallel
Strand 3	A	304	305	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	94	96	anti-parallel
Strand 3	B	101	103	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	178	first strand
Strand 2	B	134	139	parallel
Strand 3	B	377	381	parallel
Strand 4	B	330	335	parallel
Strand 5	B	352	356	parallel
Strand 6	B	317	321	anti-parallel
Strand 7	B	278	282	anti-parallel
Strand 8	B	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	270	first strand
Strand 2	B	236	246	anti-parallel
Strand 3	B	304	305	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	C	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	178	first strand
Strand 2	C	134	139	parallel
Strand 3	C	377	381	parallel
Strand 4	C	330	335	parallel
Strand 5	C	352	356	parallel
Strand 6	C	317	321	anti-parallel
Strand 7	C	278	282	anti-parallel
Strand 8	C	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	270	first strand
Strand 2	C	236	246	anti-parallel
Strand 3	C	304	305	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	101	103	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	178	first strand
Strand 2	D	134	139	parallel
Strand 3	D	377	381	parallel
Strand 4	D	330	335	parallel
Strand 5	D	352	356	parallel
Strand 6	D	317	321	anti-parallel
Strand 7	D	278	282	anti-parallel
Strand 8	D	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	270	first strand
Strand 2	D	236	246	anti-parallel
Strand 3	D	304	305	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8D