Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V8E entry

There are 2 chains in PDB entry 5V8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 91LYS 395
B
 ASN 91LYS 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5V8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
110 131Right-handed alpha
Helix 2
AA2
A
142 147Right-handed alpha
Helix 3
AA3
A
148 151Right-handed 310
Helix 4
AA4
A
158 170Right-handed alpha
Helix 5
AA5
A
179 187Right-handed alpha
Helix 6
AA6
A
188 194Right-handed alpha
Helix 7
AA7
A
204 223Right-handed alpha
Helix 8
AA8
A
232 234Right-handed 310
Helix 9
AA9
A
292 295Right-handed 310
Helix 10
AB1
A
307 311Right-handed alpha
Helix 11
AB2
A
337 341Right-handed 310
Helix 12
AB3
A
342 348Right-handed alpha
Helix 13
AB4
A
365 373Right-handed alpha
Helix 14
AB5
A
389 393Right-handed 310
Helix 15
AB6
B
110 131Right-handed alpha
Helix 16
AB7
B
142 147Right-handed alpha
Helix 17
AB8
B
148 151Right-handed 310
Helix 18
AB9
B
158 169Right-handed alpha
Helix 19
AC1
B
179 187Right-handed alpha
Helix 20
AC2
B
188 194Right-handed alpha
Helix 21
AC3
B
204 223Right-handed alpha
Helix 22
AC4
B
232 234Right-handed 310
Helix 23
AC5
B
292 295Right-handed 310
Helix 24
AC6
B
307 311Right-handed alpha
Helix 25
AC7
B
337 341Right-handed 310
Helix 26
AC8
B
342 348Right-handed alpha
Helix 27
AC9
B
365 373Right-handed alpha
Helix 28
AD1
B
389 393Right-handed 310
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There are 8 sheets in PDB entry 5V8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
101 103anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
134 139parallel
Strand 3
A
377 381parallel
Strand 4
A
330 335parallel
Strand 5
A
352 356parallel
Strand 6
A
317 321anti-parallel
Strand 7
A
278 282anti-parallel
Strand 8
A
288 290anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
236 250anti-parallel
Strand 3
A
263 270anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
236 250anti-parallel
Strand 3
A
304 306parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
102 103anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 178first strand
Strand 2
B
134 139parallel
Strand 3
B
377 381parallel
Strand 4
B
330 335parallel
Strand 5
B
352 356parallel
Strand 6
B
317 321anti-parallel
Strand 7
B
278 282anti-parallel
Strand 8
B
288 290anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 255first strand
Strand 2
B
236 250anti-parallel
Strand 3
B
263 270anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 255first strand
Strand 2
B
236 250anti-parallel
Strand 3
B
304 306parallel
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