Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V8K entry

There are 2 chains in PDB entry 5V8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 9VAL 608
B
 TYR 13VAL 37
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5V8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
15 19Right-handed 310
Helix 3
AA3
A
25 48Right-handed alpha
Helix 4
AA4
A
55 60Right-handed alpha
Helix 5
AA5
A
65 76Right-handed alpha
Helix 6
AA6
A
84 106Right-handed alpha
Helix 7
AA7
A
109 117Right-handed alpha
Helix 8
AA8
A
120 146Right-handed alpha
Helix 9
AA9
A
169 195Right-handed alpha
Helix 10
AB1
A
201 206Right-handed 310
Helix 11
AB2
A
207 233Right-handed alpha
Helix 12
AB3
A
241 249Right-handed alpha
Helix 13
AB4
A
253 263Right-handed alpha
Helix 14
AB5
A
265 300Right-handed alpha
Helix 15
AB6
A
311 316Right-handed alpha
Helix 16
AB7
A
318 353Right-handed alpha
Helix 17
AB8
A
371 379Right-handed alpha
Helix 18
AB9
A
383 410Right-handed alpha
Helix 19
AC1
A
414 420Right-handed alpha
Helix 20
AC2
A
435 439Right-handed 310
Helix 21
AC3
A
444 456Right-handed alpha
Helix 22
AC4
A
456 468Right-handed alpha
Helix 23
AC5
A
479 481Right-handed 310
Helix 24
AC6
A
482 497Right-handed alpha
Helix 25
AC7
A
498 502Right-handed 310
Helix 26
AC8
A
509 522Right-handed alpha
Helix 27
AC9
A
523 526Right-handed 310
Helix 28
AD1
A
527 548Right-handed alpha
Helix 29
AD2
A
550 569Right-handed alpha
Helix 30
AD3
A
570 575Right-handed alpha
Helix 31
AD4
A
576 578Right-handed 310
Helix 32
AD5
A
582 608Right-handed alpha
Helix 33
AD6
B
14 31Right-handed alpha
Helix 34
AD7
B
32 36Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5V8K.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
155 156anti-parallel
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