Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V8M entry

There are 12 chains in PDB entry 5V8M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	VAL 506
B	LEU 520	ASP 664
H	GLN 1	VAL 111
L	ASP 1	LEU 106
F	GLU 32	VAL 506
I	LEU 520	ASP 664
R	GLN 1	VAL 111
T	ASP 1	LEU 106
G	GLU 32	VAL 506
J	LEU 520	ASP 664
S	GLN 1	VAL 111
U	ASP 1	LEU 106

There are 66 helices in PDB entry 5V8M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	99	117	Right-handed alpha
Helix 2	AA2	A	122	127	Right-handed 310
Helix 3	AA3	A	139	151	Right-handed 310
Helix 4	AA4	A	335	350	Right-handed alpha
Helix 5	AA5	A	351	353	Right-handed 310
Helix 6	AA6	A	368	373	Right-handed alpha
Helix 7	AA7	A	377	381	Right-handed 310
Helix 8	AA8	A	387	392	Right-handed 310
Helix 9	AA9	A	475	484	Right-handed alpha
Helix 10	AB1	B	523	528	Right-handed 310
Helix 11	AB2	B	529	534	Right-handed alpha
Helix 12	AB3	B	536	542	Right-handed alpha
Helix 13	AB4	B	571	597	Right-handed alpha
Helix 14	AB5	B	611	615	Right-handed 310
Helix 15	AB6	B	618	624	Right-handed alpha
Helix 16	AB7	B	627	636	Right-handed alpha
Helix 17	AB8	B	638	649	Right-handed alpha
Helix 18	AB9	B	650	663	Right-handed alpha
Helix 19	AC1	H	28	32	Right-handed 310
Helix 20	AC2	H	60	64	Right-handed 310
Helix 21	AC3	H	83	87	Right-handed 310
Helix 22	AC4	L	79	83	Right-handed 310
Helix 23	AC5	F	99	117	Right-handed alpha
Helix 24	AC6	F	122	127	Right-handed 310
Helix 25	AC7	F	139	151	Right-handed 310
Helix 26	AC8	F	335	350	Right-handed alpha
Helix 27	AC9	F	351	353	Right-handed 310
Helix 28	AD1	F	368	373	Right-handed alpha
Helix 29	AD2	F	377	381	Right-handed 310
Helix 30	AD3	F	387	392	Right-handed 310
Helix 31	AD4	F	475	484	Right-handed alpha
Helix 32	AD5	I	523	528	Right-handed 310
Helix 33	AD6	I	529	534	Right-handed alpha
Helix 34	AD7	I	536	542	Right-handed alpha
Helix 35	AD8	I	571	597	Right-handed alpha
Helix 36	AD9	I	611	615	Right-handed 310
Helix 37	AE1	I	618	624	Right-handed alpha
Helix 38	AE2	I	627	636	Right-handed alpha
Helix 39	AE3	I	638	649	Right-handed alpha
Helix 40	AE4	I	650	663	Right-handed alpha
Helix 41	AE5	R	28	32	Right-handed 310
Helix 42	AE6	R	60	64	Right-handed 310
Helix 43	AE7	R	83	87	Right-handed 310
Helix 44	AE8	T	79	83	Right-handed 310
Helix 45	AE9	G	99	117	Right-handed alpha
Helix 46	AF1	G	122	127	Right-handed 310
Helix 47	AF2	G	139	151	Right-handed 310
Helix 48	AF3	G	335	350	Right-handed alpha
Helix 49	AF4	G	351	353	Right-handed 310
Helix 50	AF5	G	368	373	Right-handed alpha
Helix 51	AF6	G	377	381	Right-handed 310
Helix 52	AF7	G	387	392	Right-handed 310
Helix 53	AF8	G	475	484	Right-handed alpha
Helix 54	AF9	J	523	528	Right-handed 310
Helix 55	AG1	J	529	534	Right-handed alpha
Helix 56	AG2	J	536	542	Right-handed alpha
Helix 57	AG3	J	571	597	Right-handed alpha
Helix 58	AG4	J	611	615	Right-handed 310
Helix 59	AG5	J	618	624	Right-handed alpha
Helix 60	AG6	J	627	636	Right-handed alpha
Helix 61	AG7	J	638	649	Right-handed alpha
Helix 62	AG8	J	650	663	Right-handed alpha
Helix 63	AG9	S	28	32	Right-handed 310
Helix 64	AH1	S	60	64	Right-handed 310
Helix 65	AH2	S	83	87	Right-handed 310
Helix 66	AH3	U	79	83	Right-handed 310

There are 54 sheets in PDB entry 5V8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	494	499	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	227	anti-parallel
Strand 4	A	243	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	238	239	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	154	159	anti-parallel
Strand 3	A	172	177	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	191	193	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	433	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	441	456	anti-parallel
Strand 3	A	466	470	anti-parallel
Strand 4	A	359	361	parallel
Strand 5	A	394	395	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	359	361	anti-parallel
Strand 3	A	466	470	parallel
Strand 4	A	441	456	anti-parallel
Strand 5	A	284	308	anti-parallel
Strand 6	A	330	334	anti-parallel
Strand 7	A	413	419	anti-parallel
Strand 8	A	383	385	anti-parallel
Strand 9	A	374	376	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	376	first strand
Strand 2	A	383	385	anti-parallel
Strand 3	A	413	419	anti-parallel
Strand 4	A	330	334	anti-parallel
Strand 5	A	284	308	anti-parallel
Strand 6	A	316	323	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	323	first strand
Strand 2	A	284	308	anti-parallel
Strand 3	A	271	273	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	308	anti-parallel
Strand 3	A	441	456	anti-parallel
Strand 4	A	259	261	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	76	82	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	107	110	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	56	58	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	107	110	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	102	104	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	102	104	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	40	first strand
Strand 2	F	494	499	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	486	491	anti-parallel
Strand 3	F	223	227	anti-parallel
Strand 4	F	243	245	anti-parallel
Strand 5	F	84	85	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	53	56	parallel
Strand 3	F	216	218	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	92	first strand
Strand 2	F	238	239	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	133	first strand
Strand 2	F	154	159	anti-parallel
Strand 3	F	172	177	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	181	183	first strand
Strand 2	F	191	193	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	201	202	first strand
Strand 2	F	433	435	parallel
Strand 3	F	423	424	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	261	first strand
Strand 2	F	441	456	anti-parallel
Strand 3	F	466	470	anti-parallel
Strand 4	F	359	361	parallel
Strand 5	F	394	395	anti-parallel

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There are 9 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	394	395	first strand
Strand 2	F	359	361	anti-parallel
Strand 3	F	466	470	parallel
Strand 4	F	441	456	anti-parallel
Strand 5	F	284	308	anti-parallel
Strand 6	F	330	334	anti-parallel
Strand 7	F	413	419	anti-parallel
Strand 8	F	383	385	anti-parallel
Strand 9	F	374	376	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	374	376	first strand
Strand 2	F	383	385	anti-parallel
Strand 3	F	413	419	anti-parallel
Strand 4	F	330	334	anti-parallel
Strand 5	F	284	308	anti-parallel
Strand 6	F	316	323	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	316	323	first strand
Strand 2	F	284	308	anti-parallel
Strand 3	F	271	273	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	284	308	anti-parallel
Strand 3	F	441	456	anti-parallel
Strand 4	F	259	261	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	5	6	first strand
Strand 2	R	18	23	anti-parallel
Strand 3	R	76	82	anti-parallel
Strand 4	R	67	71	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	10	11	first strand
Strand 2	R	107	110	parallel
Strand 3	R	88	94	anti-parallel
Strand 4	R	34	39	anti-parallel
Strand 5	R	46	52	anti-parallel
Strand 6	R	56	58	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	10	11	first strand
Strand 2	R	107	110	parallel
Strand 3	R	88	94	anti-parallel
Strand 4	R	102	103	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	4	6	first strand
Strand 2	T	19	25	anti-parallel
Strand 3	T	70	75	anti-parallel
Strand 4	T	62	67	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	11	first strand
Strand 2	T	102	104	parallel
Strand 3	T	85	90	anti-parallel
Strand 4	T	34	38	anti-parallel
Strand 5	T	45	49	anti-parallel
Strand 6	T	53	54	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	11	first strand
Strand 2	T	102	104	parallel
Strand 3	T	85	90	anti-parallel
Strand 4	T	97	98	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	40	first strand
Strand 2	G	494	499	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	227	anti-parallel
Strand 4	G	243	245	anti-parallel
Strand 5	G	84	85	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	216	218	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	92	first strand
Strand 2	G	238	239	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	133	first strand
Strand 2	G	154	159	anti-parallel
Strand 3	G	172	177	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	183	first strand
Strand 2	G	191	193	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	202	first strand
Strand 2	G	433	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	441	456	anti-parallel
Strand 3	G	466	470	anti-parallel
Strand 4	G	359	361	parallel
Strand 5	G	394	395	anti-parallel

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There are 9 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	394	395	first strand
Strand 2	G	359	361	anti-parallel
Strand 3	G	466	470	parallel
Strand 4	G	441	456	anti-parallel
Strand 5	G	284	308	anti-parallel
Strand 6	G	330	334	anti-parallel
Strand 7	G	413	419	anti-parallel
Strand 8	G	383	385	anti-parallel
Strand 9	G	374	376	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	376	first strand
Strand 2	G	383	385	anti-parallel
Strand 3	G	413	419	anti-parallel
Strand 4	G	330	334	anti-parallel
Strand 5	G	284	308	anti-parallel
Strand 6	G	316	323	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	316	323	first strand
Strand 2	G	284	308	anti-parallel
Strand 3	G	271	273	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	308	anti-parallel
Strand 3	G	441	456	anti-parallel
Strand 4	G	259	261	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	5	6	first strand
Strand 2	S	18	23	anti-parallel
Strand 3	S	76	82	anti-parallel
Strand 4	S	67	71	anti-parallel

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There are 6 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	11	first strand
Strand 2	S	107	110	parallel
Strand 3	S	88	94	anti-parallel
Strand 4	S	34	39	anti-parallel
Strand 5	S	46	52	anti-parallel
Strand 6	S	56	58	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	11	first strand
Strand 2	S	107	110	parallel
Strand 3	S	88	94	anti-parallel
Strand 4	S	102	103	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	4	6	first strand
Strand 2	U	19	25	anti-parallel
Strand 3	U	70	75	anti-parallel
Strand 4	U	62	67	anti-parallel

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There are 6 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	11	first strand
Strand 2	U	102	104	parallel
Strand 3	U	85	90	anti-parallel
Strand 4	U	34	38	anti-parallel
Strand 5	U	45	49	anti-parallel
Strand 6	U	53	54	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	11	first strand
Strand 2	U	102	104	parallel
Strand 3	U	85	90	anti-parallel
Strand 4	U	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V8M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8M