Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V8S entry

There are 2 chains in PDB entry 5V8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLU 398
B
 HIS 0GLU 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5V8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 31Right-handed 310
Helix 2
AA2
A
58 60Right-handed 310
Helix 3
AA3
A
61 71Right-handed alpha
Helix 4
AA4
A
74 78Right-handed 310
Helix 5
AA5
A
87 92Right-handed alpha
Helix 6
AA6
A
93 102Right-handed alpha
Helix 7
AA7
A
110 122Right-handed alpha
Helix 8
AA8
A
183 203Right-handed alpha
Helix 9
AA9
A
205 217Right-handed alpha
Helix 10
AB1
A
235 249Right-handed alpha
Helix 11
AB2
A
265 281Right-handed alpha
Helix 12
AB3
A
297 305Right-handed alpha
Helix 13
AB4
A
323 337Right-handed alpha
Helix 14
AB5
A
358 365Right-handed alpha
Helix 15
AB6
A
382 398Right-handed alpha
Helix 16
AB7
B
29 31Right-handed 310
Helix 17
AB8
B
58 60Right-handed 310
Helix 18
AB9
B
61 71Right-handed alpha
Helix 19
AC1
B
74 78Right-handed 310
Helix 20
AC2
B
87 92Right-handed alpha
Helix 21
AC3
B
93 102Right-handed alpha
Helix 22
AC4
B
110 122Right-handed alpha
Helix 23
AC5
B
183 203Right-handed alpha
Helix 24
AC6
B
205 217Right-handed alpha
Helix 25
AC7
B
235 249Right-handed alpha
Helix 26
AC8
B
265 281Right-handed alpha
Helix 27
AC9
B
297 305Right-handed alpha
Helix 28
AD1
B
323 337Right-handed alpha
Helix 29
AD2
B
357 364Right-handed alpha
Helix 30
AD3
B
382 398Right-handed alpha
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There are 9 sheets in PDB entry 5V8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
14 22anti-parallel
Strand 3
A
38 47anti-parallel
Strand 4
A
50 54anti-parallel
Strand 5
A
80 82parallel
Strand 6
A
106 109parallel
Strand 7
A
126 128parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
32 33anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
140 146anti-parallel
Strand 3
A
156 160anti-parallel
Strand 4
A
163 167anti-parallel
Strand 5
A
223 226parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 290first strand
Strand 2
A
255 261parallel
Strand 3
A
310 315parallel
Strand 4
A
342 348parallel
Strand 5
A
369 376parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 10first strand
Strand 2
B
14 22anti-parallel
Strand 3
B
38 47anti-parallel
Strand 4
B
50 54anti-parallel
Strand 5
B
80 82parallel
Strand 6
B
106 109parallel
Strand 7
B
126 128parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
32 33anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
140 146anti-parallel
Strand 3
B
156 160anti-parallel
Strand 4
B
163 167anti-parallel
Strand 5
B
223 226parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 290first strand
Strand 2
B
255 261parallel
Strand 3
B
310 315parallel
Strand 4
B
342 348parallel
Strand 5
B
369 376parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 318first strand
Strand 2
B
321 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il