Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V8U entry

There are 2 chains in PDB entry 5V8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -9LEU 416
B
 SER -9THR 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5V8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 57Right-handed 310
Helix 2
AA2
A
80 100Right-handed alpha
Helix 3
AA3
A
101 114Right-handed alpha
Helix 4
AA4
A
130 132Right-handed 310
Helix 5
AA5
A
216 233Right-handed alpha
Helix 6
AA6
A
259 267Right-handed alpha
Helix 7
AA7
A
267 272Right-handed alpha
Helix 8
AA8
A
275 300Right-handed alpha
Helix 9
AA9
A
310 322Right-handed alpha
Helix 10
AB1
A
334 347Right-handed alpha
Helix 11
AB2
A
350 359Right-handed alpha
Helix 12
AB3
A
401 405Right-handed 310
Helix 13
AB4
A
409 413Right-handed 310
Helix 14
AB5
B
80 100Right-handed alpha
Helix 15
AB6
B
101 114Right-handed alpha
Helix 16
AB7
B
130 132Right-handed 310
Helix 17
AB8
B
216 233Right-handed alpha
Helix 18
AB9
B
259 267Right-handed alpha
Helix 19
AC1
B
267 272Right-handed alpha
Helix 20
AC2
B
275 300Right-handed alpha
Helix 21
AC3
B
310 322Right-handed alpha
Helix 22
AC4
B
334 347Right-handed alpha
Helix 23
AC5
B
350 359Right-handed alpha
Helix 24
AC6
B
401 405Right-handed 310
Helix 25
AC7
B
409 413Right-handed 310
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There are 8 sheets in PDB entry 5V8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
42 48anti-parallel
Strand 6
A
151 155parallel
Strand 7
A
184 187parallel
Strand 8
A
164 167anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
302 303parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
192 198anti-parallel
Strand 3
A
372 375anti-parallel
Strand 4
A
414 415anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
331 332anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
134 138anti-parallel
Strand 3
B
19 23anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
42 48anti-parallel
Strand 6
B
151 155parallel
Strand 7
B
184 187parallel
Strand 8
B
164 166anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
302 303parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 214first strand
Strand 2
B
192 196anti-parallel
Strand 3
B
372 375anti-parallel
Strand 4
B
414 415anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 325first strand
Strand 2
B
331 332anti-parallel
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