Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V8W entry

There are 8 chains in PDB entry 5V8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 582	PHE 658
B	VAL 493	GLN 597
C	LYS 582	PHE 658
D	VAL 493	PRO 596
E	LYS 582	PHE 658
F	LEU 504	PRO 596
G	LYS 582	PHE 658
H	VAL 493	GLN 597

There are 24 helices in PDB entry 5V8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	590	601	Right-handed alpha
Helix 2	AA2	A	620	623	Right-handed 310
Helix 3	AA3	A	640	653	Right-handed alpha
Helix 4	AA4	B	494	501	Right-handed alpha
Helix 5	AA5	B	522	538	Right-handed alpha
Helix 6	AA6	B	580	592	Right-handed alpha
Helix 7	AA7	C	590	601	Right-handed alpha
Helix 8	AA8	C	620	623	Right-handed 310
Helix 9	AA9	C	640	653	Right-handed alpha
Helix 10	AB1	D	494	503	Right-handed alpha
Helix 11	AB2	D	522	538	Right-handed alpha
Helix 12	AB3	D	580	593	Right-handed alpha
Helix 13	AB4	E	590	601	Right-handed alpha
Helix 14	AB5	E	620	623	Right-handed 310
Helix 15	AB6	E	640	654	Right-handed alpha
Helix 16	AB7	F	525	538	Right-handed alpha
Helix 17	AB8	F	580	592	Right-handed alpha
Helix 18	AB9	G	590	601	Right-handed alpha
Helix 19	AC1	G	621	623	Right-handed 310
Helix 20	AC2	G	640	653	Right-handed alpha
Helix 21	AC3	H	494	503	Right-handed alpha
Helix 22	AC4	H	522	524	Right-handed 310
Helix 23	AC5	H	525	538	Right-handed alpha
Helix 24	AC6	H	580	592	Right-handed alpha

There are 8 sheets in PDB entry 5V8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	586	first strand
Strand 2	A	656	657	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	610	first strand
Strand 2	A	615	619	anti-parallel
Strand 3	A	624	629	anti-parallel
Strand 4	A	632	638	anti-parallel
Strand 5	B	508	518	parallel
Strand 6	B	569	577	anti-parallel
Strand 7	B	556	560	anti-parallel
Strand 8	B	551	553	anti-parallel
Strand 9	B	543	545	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	584	587	first strand
Strand 2	C	655	658	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	607	609	first strand
Strand 2	C	614	618	anti-parallel
Strand 3	C	625	629	anti-parallel
Strand 4	C	632	638	anti-parallel
Strand 5	D	508	518	parallel
Strand 6	D	569	577	anti-parallel
Strand 7	D	556	560	anti-parallel
Strand 8	D	551	553	anti-parallel
Strand 9	D	543	545	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	584	586	first strand
Strand 2	E	656	658	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	607	610	first strand
Strand 2	E	615	619	anti-parallel
Strand 3	E	624	629	anti-parallel
Strand 4	E	632	638	anti-parallel
Strand 5	F	508	516	parallel
Strand 6	F	571	577	anti-parallel
Strand 7	F	556	560	anti-parallel
Strand 8	F	551	553	anti-parallel
Strand 9	F	543	545	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	585	586	first strand
Strand 2	G	656	657	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	606	611	first strand
Strand 2	G	614	619	anti-parallel
Strand 3	G	624	629	anti-parallel
Strand 4	G	632	638	anti-parallel
Strand 5	H	508	517	parallel
Strand 6	H	570	577	anti-parallel
Strand 7	H	556	560	anti-parallel
Strand 8	H	551	553	anti-parallel
Strand 9	H	543	545	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8W