Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V8X entry

There are 4 chains in PDB entry 5V8X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	LYS 336
B	VAL 2	ALA 335
C	VAL 3	ILE 334
D	LYS 4	ALA 335

There are 59 helices in PDB entry 5V8X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	23	Right-handed alpha
Helix 2	AA2	A	37	47	Right-handed alpha
Helix 3	AA3	A	79	83	Right-handed 310
Helix 4	AA4	A	84	89	Right-handed 310
Helix 5	AA5	A	102	107	Right-handed alpha
Helix 6	AA6	A	108	110	Right-handed 310
Helix 7	AA7	A	136	140	Right-handed 310
Helix 8	AA8	A	151	168	Right-handed alpha
Helix 9	AA9	A	202	206	Right-handed 310
Helix 10	AB1	A	215	219	Right-handed 310
Helix 11	AB2	A	222	226	Right-handed 310
Helix 12	AB3	A	255	267	Right-handed alpha
Helix 13	AB4	A	279	284	Right-handed 310
Helix 14	AB5	A	295	297	Right-handed 310
Helix 15	AB6	A	317	334	Right-handed alpha
Helix 16	AB7	B	11	23	Right-handed alpha
Helix 17	AB8	B	37	47	Right-handed alpha
Helix 18	AB9	B	79	83	Right-handed 310
Helix 19	AC1	B	84	89	Right-handed 310
Helix 20	AC2	B	102	107	Right-handed alpha
Helix 21	AC3	B	108	110	Right-handed 310
Helix 22	AC4	B	136	140	Right-handed 310
Helix 23	AC5	B	151	168	Right-handed alpha
Helix 24	AC6	B	202	206	Right-handed 310
Helix 25	AC7	B	215	219	Right-handed 310
Helix 26	AC8	B	222	226	Right-handed 310
Helix 27	AC9	B	255	267	Right-handed alpha
Helix 28	AD1	B	279	284	Right-handed 310
Helix 29	AD2	B	295	297	Right-handed 310
Helix 30	AD3	B	317	334	Right-handed alpha
Helix 31	AD4	C	11	23	Right-handed alpha
Helix 32	AD5	C	37	47	Right-handed alpha
Helix 33	AD6	C	79	83	Right-handed 310
Helix 34	AD7	C	84	89	Right-handed 310
Helix 35	AD8	C	102	107	Right-handed alpha
Helix 36	AD9	C	108	110	Right-handed 310
Helix 37	AE1	C	136	140	Right-handed 310
Helix 38	AE2	C	151	168	Right-handed alpha
Helix 39	AE3	C	202	206	Right-handed 310
Helix 40	AE4	C	215	219	Right-handed 310
Helix 41	AE5	C	222	226	Right-handed 310
Helix 42	AE6	C	255	267	Right-handed alpha
Helix 43	AE7	C	279	284	Right-handed 310
Helix 44	AE8	C	295	297	Right-handed 310
Helix 45	AE9	C	317	334	Right-handed alpha
Helix 46	AF1	D	11	23	Right-handed alpha
Helix 47	AF2	D	37	47	Right-handed alpha
Helix 48	AF3	D	79	83	Right-handed 310
Helix 49	AF4	D	84	89	Right-handed 310
Helix 50	AF5	D	102	107	Right-handed alpha
Helix 51	AF6	D	136	140	Right-handed 310
Helix 52	AF7	D	151	168	Right-handed alpha
Helix 53	AF8	D	202	206	Right-handed 310
Helix 54	AF9	D	215	221	Right-handed 310
Helix 55	AG1	D	222	226	Right-handed 310
Helix 56	AG2	D	256	267	Right-handed alpha
Helix 57	AG3	D	279	284	Right-handed 310
Helix 58	AG4	D	295	297	Right-handed 310
Helix 59	AG5	D	317	334	Right-handed alpha

There are 12 sheets in PDB entry 5V8X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	64	67	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	28	33	parallel
Strand 5	A	4	8	parallel
Strand 6	A	92	95	parallel
Strand 7	A	117	120	parallel
Strand 8	A	146	148	parallel
Strand 9	A	129	130	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	229	236	anti-parallel
Strand 3	A	170	180	parallel
Strand 4	A	242	250	anti-parallel
Strand 5	A	305	314	anti-parallel
Strand 6	A	290	293	anti-parallel
Strand 7	A	271	274	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	229	236	anti-parallel
Strand 3	A	170	180	parallel
Strand 4	A	242	250	anti-parallel
Strand 5	A	305	314	anti-parallel
Strand 6	A	298	302	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	64	67	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	27	33	parallel
Strand 5	B	3	8	parallel
Strand 6	B	92	95	parallel
Strand 7	B	117	120	parallel
Strand 8	B	146	148	parallel
Strand 9	B	129	130	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	229	236	anti-parallel
Strand 3	B	170	180	parallel
Strand 4	B	242	250	anti-parallel
Strand 5	B	305	314	anti-parallel
Strand 6	B	290	293	anti-parallel
Strand 7	B	271	274	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	229	236	anti-parallel
Strand 3	B	170	180	parallel
Strand 4	B	242	250	anti-parallel
Strand 5	B	305	314	anti-parallel
Strand 6	B	298	302	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	64	67	anti-parallel
Strand 3	C	71	75	anti-parallel
Strand 4	C	28	33	parallel
Strand 5	C	4	8	parallel
Strand 6	C	92	95	parallel
Strand 7	C	117	120	parallel
Strand 8	C	146	148	parallel
Strand 9	C	129	130	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	211	first strand
Strand 2	C	229	236	anti-parallel
Strand 3	C	172	180	parallel
Strand 4	C	242	249	anti-parallel
Strand 5	C	305	314	anti-parallel
Strand 6	C	290	293	anti-parallel
Strand 7	C	271	274	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	211	first strand
Strand 2	C	229	236	anti-parallel
Strand 3	C	172	180	parallel
Strand 4	C	242	249	anti-parallel
Strand 5	C	305	314	anti-parallel
Strand 6	C	298	302	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	61	first strand
Strand 2	D	64	67	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	29	33	parallel
Strand 5	D	5	8	parallel
Strand 6	D	94	95	parallel
Strand 7	D	119	120	parallel
Strand 8	D	147	148	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	229	236	anti-parallel
Strand 3	D	170	180	parallel
Strand 4	D	242	250	anti-parallel
Strand 5	D	305	314	anti-parallel
Strand 6	D	290	293	anti-parallel
Strand 7	D	271	274	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	229	236	anti-parallel
Strand 3	D	170	180	parallel
Strand 4	D	242	250	anti-parallel
Strand 5	D	305	314	anti-parallel
Strand 6	D	298	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V8X

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8X