Analysis of interatomic Contacts of Structural Units in PDB entry:
5V8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V8Z entry

There are 4 chains in PDB entry 5V8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 157LYS 253
B
 PHE 331SER 357
C
 SER 157LYS 254
D
 PHE 331SER 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5V8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
158 171Right-handed alpha
Helix 2
AA2
A
173 188Right-handed alpha
Helix 3
AA3
A
189 191Right-handed 310
Helix 4
AA4
A
192 194Right-handed 310
Helix 5
AA5
A
195 213Right-handed alpha
Helix 6
AA6
A
215 231Right-handed alpha
Helix 7
AA7
A
234 250Right-handed alpha
Helix 8
AA8
B
344 349Right-handed alpha
Helix 9
AA9
C
158 171Right-handed alpha
Helix 10
AB1
C
173 188Right-handed alpha
Helix 11
AB2
C
189 191Right-handed 310
Helix 12
AB3
C
192 194Right-handed 310
Helix 13
AB4
C
195 213Right-handed alpha
Helix 14
AB5
C
215 230Right-handed alpha
Helix 15
AB6
C
234 249Right-handed alpha
Helix 16
AB7
C
250 252Right-handed 310
Helix 17
AB8
D
344 349Right-handed alpha
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There are 2 sheets in PDB entry 5V8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 333first strand
Strand 2
B
355 356anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
332 333first strand
Strand 2
D
355 356anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il