Analysis of interatomic Contacts of Structural Units in PDB entry:
5V96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V96 entry

There are 3 chains in PDB entry 5V96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6TYR 472
B
 ILE 9TYR 472
C
 THR 8PHE 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 98 helices in PDB entry 5V96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 17Right-handed 310
Helix 2
AA2
A
18 31Right-handed alpha
Helix 3
AA3
A
33 44Right-handed alpha
Helix 4
AA4
A
61 74Right-handed alpha
Helix 5
AA5
A
89 99Right-handed alpha
Helix 6
AA6
A
110 123Right-handed alpha
Helix 7
AA7
A
138 153Right-handed alpha
Helix 8
AA8
A
154 159Right-handed 310
Helix 9
AA9
A
163 180Right-handed alpha
Helix 10
AB1
A
182 188Right-handed alpha
Helix 11
AB2
A
189 191Right-handed 310
Helix 12
AB3
A
198 211Right-handed alpha
Helix 13
AB4
A
224 229Right-handed alpha
Helix 14
AB5
A
230 249Right-handed alpha
Helix 15
AB6
A
263 276Right-handed alpha
Helix 16
AB7
A
286 296Right-handed alpha
Helix 17
AB8
A
303 307Right-handed 310
Helix 18
AB9
A
324 330Right-handed alpha
Helix 19
AC1
A
348 355Right-handed alpha
Helix 20
AC2
A
383 385Right-handed 310
Helix 21
AC3
A
386 391Right-handed alpha
Helix 22
AC4
A
396 417Right-handed alpha
Helix 23
AC5
A
427 440Right-handed alpha
Helix 24
AC6
A
450 458Right-handed alpha
Helix 25
AC7
B
15 17Right-handed 310
Helix 26
AC8
B
18 31Right-handed alpha
Helix 27
AC9
B
33 44Right-handed alpha
Helix 28
AD1
B
61 74Right-handed alpha
Helix 29
AD2
B
89 99Right-handed alpha
Helix 30
AD3
B
110 123Right-handed alpha
Helix 31
AD4
B
138 153Right-handed alpha
Helix 32
AD5
B
154 159Right-handed 310
Helix 33
AD6
B
163 180Right-handed alpha
Helix 34
AD7
B
182 188Right-handed alpha
Helix 35
AD8
B
189 191Right-handed 310
Helix 36
AD9
B
198 211Right-handed alpha
Helix 37
AE1
B
224 229Right-handed alpha
Helix 38
AE2
B
230 249Right-handed alpha
Helix 39
AE3
B
263 276Right-handed alpha
Helix 40
AE4
B
286 296Right-handed alpha
Helix 41
AE5
B
302 307Right-handed alpha
Helix 42
AE6
B
324 330Right-handed alpha
Helix 43
AE7
B
348 355Right-handed alpha
Helix 44
AE8
B
383 385Right-handed 310
Helix 45
AE9
B
386 392Right-handed alpha
Helix 46
AF1
B
396 417Right-handed alpha
Helix 47
AF2
B
427 440Right-handed alpha
Helix 48
AF3
B
450 458Right-handed alpha
Helix 49
AF4
C
15 17Right-handed 310
Helix 50
AF5
C
18 31Right-handed alpha
Helix 51
AF6
C
33 44Right-handed alpha
Helix 52
AF7
C
61 74Right-handed alpha
Helix 53
AF8
C
89 99Right-handed alpha
Helix 54
AF9
C
110 123Right-handed alpha
Helix 55
AG1
C
138 153Right-handed alpha
Helix 56
AG2
C
154 159Right-handed 310
Helix 57
AG3
C
163 180Right-handed alpha
Helix 58
AG4
C
182 188Right-handed alpha
Helix 59
AG5
C
189 191Right-handed 310
Helix 60
AG6
C
198 211Right-handed alpha
Helix 61
AG7
C
224 229Right-handed alpha
Helix 62
AG8
C
230 249Right-handed alpha
Helix 63
AG9
C
263 276Right-handed alpha
Helix 64
AH1
C
286 296Right-handed alpha
Helix 65
AH2
C
302 307Right-handed alpha
Helix 66
AH3
C
324 330Right-handed alpha
Helix 67
AH4
C
348 355Right-handed alpha
Helix 68
AH5
C
383 385Right-handed 310
Helix 69
AH6
C
386 392Right-handed alpha
Helix 70
AH7
C
396 417Right-handed alpha
Helix 71
AH8
C
427 440Right-handed alpha
Helix 72
AH9
C
441 443Right-handed 310
Helix 73
AI1
C
450 458Right-handed alpha
Helix 74
AI2
D
15 17Right-handed 310
Helix 75
AI3
D
18 31Right-handed alpha
Helix 76
AI4
D
33 44Right-handed alpha
Helix 77
AI5
D
61 74Right-handed alpha
Helix 78
AI6
D
89 99Right-handed alpha
Helix 79
AI7
D
110 123Right-handed alpha
Helix 80
AI8
D
138 153Right-handed alpha
Helix 81
AI9
D
154 159Right-handed 310
Helix 82
AJ1
D
163 180Right-handed alpha
Helix 83
AJ2
D
182 188Right-handed alpha
Helix 84
AJ3
D
189 191Right-handed 310
Helix 85
AJ4
D
198 211Right-handed alpha
Helix 86
AJ5
D
224 229Right-handed alpha
Helix 87
AJ6
D
230 249Right-handed alpha
Helix 88
AJ7
D
263 276Right-handed alpha
Helix 89
AJ8
D
286 296Right-handed alpha
Helix 90
AJ9
D
302 307Right-handed alpha
Helix 91
AK1
D
324 330Right-handed alpha
Helix 92
AK2
D
348 355Right-handed alpha
Helix 93
AK3
D
383 385Right-handed 310
Helix 94
AK4
D
386 391Right-handed alpha
Helix 95
AK5
D
396 417Right-handed alpha
Helix 96
AK6
D
427 440Right-handed alpha
Helix 97
AK7
D
441 443Right-handed 310
Helix 98
AK8
D
450 458Right-handed alpha
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There are 8 sheets in PDB entry 5V96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
77 81parallel
Strand 3
A
53 57parallel
Strand 4
A
132 135parallel
Strand 5
A
193 196parallel
Strand 6
A
218 220parallel
Strand 7
A
423 424parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
279 283parallel
Strand 3
A
256 260parallel
Strand 4
A
312 315parallel
Strand 5
A
335 339parallel
Strand 6
A
377 381parallel
Strand 7
A
367 371anti-parallel
Strand 8
A
359 364anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
77 81parallel
Strand 3
B
53 57parallel
Strand 4
B
132 135parallel
Strand 5
B
193 196parallel
Strand 6
B
218 220parallel
Strand 7
B
423 424parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
279 283parallel
Strand 3
B
256 260parallel
Strand 4
B
312 315parallel
Strand 5
B
335 339parallel
Strand 6
B
377 381parallel
Strand 7
B
367 371anti-parallel
Strand 8
B
359 364anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 104first strand
Strand 2
C
77 81parallel
Strand 3
C
53 57parallel
Strand 4
C
132 135parallel
Strand 5
C
193 196parallel
Strand 6
C
218 220parallel
Strand 7
C
423 424parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
299 300first strand
Strand 2
C
279 283parallel
Strand 3
C
256 260parallel
Strand 4
C
312 315parallel
Strand 5
C
335 339parallel
Strand 6
C
377 381parallel
Strand 7
C
367 371anti-parallel
Strand 8
C
359 364anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 104first strand
Strand 2
D
77 81parallel
Strand 3
D
53 57parallel
Strand 4
D
132 135parallel
Strand 5
D
193 196parallel
Strand 6
D
218 220parallel
Strand 7
D
423 424parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
299 300first strand
Strand 2
D
279 283parallel
Strand 3
D
256 260parallel
Strand 4
D
312 315parallel
Strand 5
D
335 339parallel
Strand 6
D
377 381parallel
Strand 7
D
367 371anti-parallel
Strand 8
D
359 364anti-parallel
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