Analysis of interatomic Contacts of Structural Units in PDB entry:
5V9H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V9H entry

There are 2 chains in PDB entry 5V9H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 7	MET 622
B	LEU 9	MET 622

There are 47 helices in PDB entry 5V9H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	13	Right-handed 310
Helix 2	AA2	A	24	39	Right-handed alpha
Helix 3	AA3	A	49	63	Right-handed alpha
Helix 4	AA4	A	88	90	Right-handed 310
Helix 5	AA5	A	98	103	Right-handed alpha
Helix 6	AA6	A	118	128	Right-handed alpha
Helix 7	AA7	A	163	174	Right-handed alpha
Helix 8	AA8	A	177	185	Right-handed alpha
Helix 9	AA9	A	213	217	Right-handed 310
Helix 10	AB1	A	235	240	Right-handed alpha
Helix 11	AB2	A	243	248	Right-handed alpha
Helix 12	AB3	A	248	259	Right-handed alpha
Helix 13	AB4	A	289	295	Right-handed alpha
Helix 14	AB5	A	344	352	Right-handed alpha
Helix 15	AB6	A	449	460	Right-handed alpha
Helix 16	AB7	A	479	482	Right-handed 310
Helix 17	AB8	A	489	500	Right-handed alpha
Helix 18	AB9	A	529	532	Right-handed 310
Helix 19	AC1	A	533	546	Right-handed alpha
Helix 20	AC2	A	573	578	Right-handed alpha
Helix 21	AC3	A	581	600	Right-handed alpha
Helix 22	AC4	A	601	604	Right-handed 310
Helix 23	AC5	A	605	621	Right-handed alpha
Helix 24	AC6	B	11	13	Right-handed 310
Helix 25	AC7	B	24	39	Right-handed alpha
Helix 26	AC8	B	49	63	Right-handed alpha
Helix 27	AC9	B	88	90	Right-handed 310
Helix 28	AD1	B	98	103	Right-handed alpha
Helix 29	AD2	B	118	128	Right-handed alpha
Helix 30	AD3	B	163	174	Right-handed alpha
Helix 31	AD4	B	177	185	Right-handed alpha
Helix 32	AD5	B	235	240	Right-handed alpha
Helix 33	AD6	B	243	248	Right-handed alpha
Helix 34	AD7	B	248	259	Right-handed alpha
Helix 35	AD8	B	289	295	Right-handed alpha
Helix 36	AD9	B	344	351	Right-handed alpha
Helix 37	AE1	B	411	413	Right-handed 310
Helix 38	AE2	B	449	460	Right-handed alpha
Helix 39	AE3	B	479	482	Right-handed 310
Helix 40	AE4	B	489	499	Right-handed alpha
Helix 41	AE5	B	500	503	Right-handed 310
Helix 42	AE6	B	529	532	Right-handed 310
Helix 43	AE7	B	533	546	Right-handed alpha
Helix 44	AE8	B	573	578	Right-handed alpha
Helix 45	AE9	B	581	600	Right-handed alpha
Helix 46	AF1	B	601	604	Right-handed 310
Helix 47	AF2	B	605	621	Right-handed alpha

There are 16 sheets in PDB entry 5V9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	42	45	parallel
Strand 3	A	138	146	parallel
Strand 4	A	155	161	anti-parallel
Strand 5	A	190	195	parallel
Strand 6	A	227	231	parallel
Strand 7	A	218	222	anti-parallel
Strand 8	A	92	95	parallel
Strand 9	A	116	117	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	42	45	parallel
Strand 3	A	138	146	parallel
Strand 4	A	175	176	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	75	78	anti-parallel
Strand 3	A	356	358	parallel
Strand 4	A	405	409	anti-parallel
Strand 5	A	331	335	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	313	317	anti-parallel
Strand 3	A	323	326	anti-parallel
Strand 4	A	426	434	anti-parallel
Strand 5	A	277	283	parallel
Strand 6	A	266	271	anti-parallel
Strand 7	A	304	309	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	313	317	anti-parallel
Strand 3	A	323	326	anti-parallel
Strand 4	A	426	434	anti-parallel
Strand 5	A	510	514	parallel
Strand 6	A	444	446	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	369	first strand
Strand 2	A	361	363	anti-parallel
Strand 3	A	383	384	anti-parallel
Strand 4	A	390	391	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	463	first strand
Strand 2	A	475	477	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	556	559	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	42	45	parallel
Strand 3	B	138	146	parallel
Strand 4	B	155	161	anti-parallel
Strand 5	B	190	195	parallel
Strand 6	B	227	231	parallel
Strand 7	B	218	222	anti-parallel
Strand 8	B	92	95	parallel
Strand 9	B	116	117	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	42	45	parallel
Strand 3	B	138	146	parallel
Strand 4	B	175	176	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	75	78	anti-parallel
Strand 3	B	356	358	parallel
Strand 4	B	405	409	anti-parallel
Strand 5	B	331	335	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	313	317	anti-parallel
Strand 3	B	323	326	anti-parallel
Strand 4	B	426	434	anti-parallel
Strand 5	B	277	283	parallel
Strand 6	B	266	271	anti-parallel
Strand 7	B	304	309	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	313	317	anti-parallel
Strand 3	B	323	326	anti-parallel
Strand 4	B	426	434	anti-parallel
Strand 5	B	510	514	parallel
Strand 6	B	444	446	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	369	first strand
Strand 2	B	361	363	anti-parallel
Strand 3	B	383	384	anti-parallel
Strand 4	B	390	391	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	463	first strand
Strand 2	B	475	477	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	553	first strand
Strand 2	B	556	559	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V9H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V9H