Analysis of interatomic Contacts of Structural Units in PDB entry:
5V9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V9P entry

There are 2 chains in PDB entry 5V9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12ARG 785
B
 UNK 219UNK 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5V9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 30Right-handed 310
Helix 2
AA2
A
31 44Right-handed alpha
Helix 3
AA3
A
84 101Right-handed alpha
Helix 4
AA4
A
116 127Right-handed alpha
Helix 5
AA5
A
129 137Right-handed alpha
Helix 6
AA6
A
138 146Right-handed alpha
Helix 7
AA7
A
153 174Right-handed alpha
Helix 8
AA8
A
362 379Right-handed alpha
Helix 9
AA9
A
381 385Right-handed 310
Helix 10
AB1
A
386 400Right-handed alpha
Helix 11
AB2
A
414 419Right-handed alpha
Helix 12
AB3
A
432 441Right-handed alpha
Helix 13
AB4
A
447 451Right-handed 310
Helix 14
AB5
A
454 459Right-handed 310
Helix 15
AB6
A
485 489Right-handed 310
Helix 16
AB7
A
507 509Right-handed 310
Helix 17
AB8
A
510 520Right-handed alpha
Helix 18
AB9
A
522 529Right-handed alpha
Helix 19
AC1
A
531 536Right-handed alpha
Helix 20
AC2
A
541 548Right-handed alpha
Helix 21
AC3
A
588 590Right-handed 310
Helix 22
AC4
A
591 605Right-handed alpha
Helix 23
AC5
A
612 622Right-handed alpha
Helix 24
AC6
A
628 656Right-handed alpha
Helix 25
AC7
A
665 669Right-handed 310
Helix 26
AC8
A
670 674Right-handed 310
Helix 27
AC9
A
723 744Right-handed alpha
Helix 28
AD1
A
766 773Right-handed alpha
Helix 29
AD2
B
221 226Right-handed alpha
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There are 5 sheets in PDB entry 5V9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
48 51parallel
Strand 3
A
562 565anti-parallel
Strand 4
A
490 498anti-parallel
Strand 5
A
579 586anti-parallel
Strand 6
A
470 474anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
406 409anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
113 114anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 483first strand
Strand 2
A
571 575anti-parallel
Strand 3
A
501 505anti-parallel
Strand 4
A
553 557anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 699first strand
Strand 2
A
686 688anti-parallel
Strand 3
A
716 718anti-parallel
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