Analysis of interatomic Contacts of Structural Units in PDB entry:
5V9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V9T entry

There are 2 chains in PDB entry 5V9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12ARG 785
B
 GLU 12ARG 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 5V9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 30Right-handed 310
Helix 2
AA2
A
31 44Right-handed alpha
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
78 81Right-handed 310
Helix 5
AA5
A
84 102Right-handed alpha
Helix 6
AA6
A
116 127Right-handed alpha
Helix 7
AA7
A
129 135Right-handed alpha
Helix 8
AA8
A
138 146Right-handed alpha
Helix 9
AA9
A
153 166Right-handed alpha
Helix 10
AB1
A
166 174Right-handed alpha
Helix 11
AB2
A
362 379Right-handed alpha
Helix 12
AB3
A
381 385Right-handed 310
Helix 13
AB4
A
386 400Right-handed alpha
Helix 14
AB5
A
415 419Right-handed alpha
Helix 15
AB6
A
432 441Right-handed alpha
Helix 16
AB7
A
447 451Right-handed 310
Helix 17
AB8
A
454 459Right-handed 310
Helix 18
AB9
A
510 520Right-handed alpha
Helix 19
AC1
A
522 529Right-handed alpha
Helix 20
AC2
A
531 536Right-handed alpha
Helix 21
AC3
A
541 547Right-handed alpha
Helix 22
AC4
A
588 590Right-handed 310
Helix 23
AC5
A
591 604Right-handed alpha
Helix 24
AC6
A
612 622Right-handed alpha
Helix 25
AC7
A
628 653Right-handed alpha
Helix 26
AC8
A
666 669Right-handed 310
Helix 27
AC9
A
670 674Right-handed 310
Helix 28
AD1
A
723 744Right-handed alpha
Helix 29
AD2
A
766 773Right-handed alpha
Helix 30
AD3
B
31 39Right-handed alpha
Helix 31
AD4
B
39 44Right-handed alpha
Helix 32
AD5
B
64 68Right-handed 310
Helix 33
AD6
B
78 81Right-handed 310
Helix 34
AD7
B
84 102Right-handed alpha
Helix 35
AD8
B
116 127Right-handed alpha
Helix 36
AD9
B
129 135Right-handed alpha
Helix 37
AE1
B
138 146Right-handed alpha
Helix 38
AE2
B
153 174Right-handed alpha
Helix 39
AE3
B
195 200Right-handed alpha
Helix 40
AE4
B
362 379Right-handed alpha
Helix 41
AE5
B
381 385Right-handed 310
Helix 42
AE6
B
386 400Right-handed alpha
Helix 43
AE7
B
415 419Right-handed alpha
Helix 44
AE8
B
432 441Right-handed alpha
Helix 45
AE9
B
447 451Right-handed 310
Helix 46
AF1
B
454 458Right-handed 310
Helix 47
AF2
B
507 509Right-handed 310
Helix 48
AF3
B
510 520Right-handed alpha
Helix 49
AF4
B
522 529Right-handed alpha
Helix 50
AF5
B
530 534Right-handed 310
Helix 51
AF6
B
541 547Right-handed alpha
Helix 52
AF7
B
588 590Right-handed 310
Helix 53
AF8
B
591 605Right-handed alpha
Helix 54
AF9
B
612 622Right-handed alpha
Helix 55
AG1
B
628 655Right-handed alpha
Helix 56
AG2
B
665 669Right-handed 310
Helix 57
AG3
B
670 674Right-handed 310
Helix 58
AG4
B
723 744Right-handed alpha
Helix 59
AG5
B
766 773Right-handed alpha
Helix 60
AG6
G
221 226Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 5V9T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
48 51parallel
Strand 3
A
562 565anti-parallel
Strand 4
A
490 498anti-parallel
Strand 5
A
579 586anti-parallel
Strand 6
A
470 474anti-parallel
Strand 7
A
406 414anti-parallel
Strand 8
A
73 76anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 483first strand
Strand 2
A
571 575anti-parallel
Strand 3
A
501 505anti-parallel
Strand 4
A
553 557anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 664first strand
Strand 2
B
201 202anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
686 688first strand
Strand 2
A
716 718anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
562 565anti-parallel
Strand 3
B
490 498anti-parallel
Strand 4
B
579 586anti-parallel
Strand 5
B
470 474anti-parallel
Strand 6
B
406 414anti-parallel
Strand 7
B
73 76anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 110first strand
Strand 2
B
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 483first strand
Strand 2
B
571 575anti-parallel
Strand 3
B
501 505anti-parallel
Strand 4
B
553 557anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
698 699first strand
Strand 2
B
686 688anti-parallel
Strand 3
B
716 718anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il