Analysis of interatomic Contacts of Structural Units in PDB entry:
5V9X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V9X entry

There are 2 chains in PDB entry 5V9X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6GLY 852
B
 G 1 T 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5V9X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed 310
Helix 2
AA2
A
13 24Right-handed alpha
Helix 3
AA3
A
28 40Right-handed alpha
Helix 4
AA4
A
53 68Right-handed alpha
Helix 5
AA5
A
85 96Right-handed alpha
Helix 6
AA6
A
96 110Right-handed alpha
Helix 7
AA7
A
127 137Right-handed alpha
Helix 8
AA8
A
145 154Right-handed alpha
Helix 9
AA9
A
155 162Right-handed 310
Helix 10
AB1
A
172 177Right-handed alpha
Helix 11
AB2
A
178 193Right-handed alpha
Helix 12
AB3
A
210 220Right-handed alpha
Helix 13
AB4
A
254 268Right-handed alpha
Helix 14
AB5
A
278 298Right-handed alpha
Helix 15
AB6
A
339 352Right-handed alpha
Helix 16
AB7
A
362 365Right-handed 310
Helix 17
AB8
A
384 393Right-handed alpha
Helix 18
AB9
A
411 428Right-handed alpha
Helix 19
AC1
A
439 451Right-handed alpha
Helix 20
AC2
A
458 468Right-handed alpha
Helix 21
AC3
A
475 488Right-handed alpha
Helix 22
AC4
A
516 523Right-handed alpha
Helix 23
AC5
A
552 558Right-handed alpha
Helix 24
AC6
A
605 620Right-handed alpha
Helix 25
AC7
A
623 633Right-handed alpha
Helix 26
AC8
A
639 656Right-handed alpha
Helix 27
AC9
A
685 704Right-handed alpha
Helix 28
AD1
A
730 734Right-handed 310
Helix 29
AD2
A
737 739Right-handed 310
Helix 30
AD3
A
740 749Right-handed alpha
Helix 31
AD4
A
752 766Right-handed alpha
Helix 32
AD5
A
779 795Right-handed alpha
Helix 33
AD6
A
800 813Right-handed alpha
Helix 34
AD7
A
816 829Right-handed alpha
Helix 35
AD8
A
843 850Right-handed alpha
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There are 4 sheets in PDB entry 5V9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
141 144parallel
Strand 3
A
79 82parallel
Strand 4
A
166 170parallel
Strand 5
A
200 205parallel
Strand 6
A
43 47parallel
Strand 7
A
224 227parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 334first strand
Strand 2
A
357 360parallel
Strand 3
A
271 275parallel
Strand 4
A
373 379parallel
Strand 5
A
403 408parallel
Strand 6
A
235 241parallel
Strand 7
A
636 638parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
510 513anti-parallel
Strand 3
A
502 505anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 713first strand
Strand 2
A
716 721anti-parallel
Strand 3
A
676 681anti-parallel
Strand 4
A
663 670anti-parallel
Strand 5
A
833 838parallel
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