Analysis of interatomic Contacts of Structural Units in PDB entry:
5VA6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VA6 entry

There are 6 chains in PDB entry 5VA6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 159VAL 374
B
 ARG 160VAL 374
C
 GLN 20ALA 26
C
 LYS 28LYS 37
D
 LYS 24ALA 26
D
 LYS 28VAL 36
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5VA6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
169 187Right-handed alpha
Helix 2
AA2
A
203 207Right-handed 310
Helix 3
AA3
A
208 212Right-handed 310
Helix 4
AA4
A
220 237Right-handed alpha
Helix 5
AA5
A
277 279Right-handed 310
Helix 6
AA6
A
309 314Right-handed 310
Helix 7
AA7
A
323 328Right-handed 310
Helix 8
AA8
B
169 187Right-handed alpha
Helix 9
AA9
B
203 207Right-handed 310
Helix 10
AB1
B
208 212Right-handed 310
Helix 11
AB2
B
220 237Right-handed alpha
Helix 12
AB3
B
277 279Right-handed 310
Helix 13
AB4
B
309 314Right-handed 310
Helix 14
AB5
B
323 328Right-handed 310
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There are 10 sheets in PDB entry 5VA6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
307 308parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 247first strand
Strand 2
A
251 256anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
340 347anti-parallel
Strand 3
A
330 337anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
300 303anti-parallel
Strand 3
A
288 291anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
358 359parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 191first strand
Strand 2
B
307 308parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 247first strand
Strand 2
B
251 256anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 268first strand
Strand 2
B
340 347anti-parallel
Strand 3
B
330 337anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 275first strand
Strand 2
B
300 303anti-parallel
Strand 3
B
287 291anti-parallel
Strand 4
D
27 28parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
358 359parallel
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