Analysis of interatomic Contacts of Structural Units in PDB entry:
5VA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VA8 entry

There are 4 chains in PDB entry 5VA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1TYR 259
B
 HIS -1TYR 259
C
 HIS -1TYR 259
D
 HIS -1TYR 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5VA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
40 56Right-handed alpha
Helix 3
AA3
A
68 79Right-handed alpha
Helix 4
AA4
A
96 100Right-handed 310
Helix 5
AA5
A
101 113Right-handed alpha
Helix 6
AA6
A
113 131Right-handed alpha
Helix 7
AA7
A
140 144Right-handed 310
Helix 8
AA8
A
150 172Right-handed alpha
Helix 9
AA9
A
188 203Right-handed alpha
Helix 10
AB1
A
205 215Right-handed alpha
Helix 11
AB2
A
224 236Right-handed alpha
Helix 12
AB3
B
17 30Right-handed alpha
Helix 13
AB4
B
40 56Right-handed alpha
Helix 14
AB5
B
68 79Right-handed alpha
Helix 15
AB6
B
96 100Right-handed 310
Helix 16
AB7
B
101 113Right-handed alpha
Helix 17
AB8
B
113 131Right-handed alpha
Helix 18
AB9
B
140 144Right-handed 310
Helix 19
AC1
B
150 172Right-handed alpha
Helix 20
AC2
B
188 203Right-handed alpha
Helix 21
AC3
B
205 215Right-handed alpha
Helix 22
AC4
B
224 236Right-handed alpha
Helix 23
AC5
C
17 30Right-handed alpha
Helix 24
AC6
C
40 56Right-handed alpha
Helix 25
AC7
C
68 79Right-handed alpha
Helix 26
AC8
C
96 100Right-handed 310
Helix 27
AC9
C
101 113Right-handed alpha
Helix 28
AD1
C
113 131Right-handed alpha
Helix 29
AD2
C
140 144Right-handed 310
Helix 30
AD3
C
150 172Right-handed alpha
Helix 31
AD4
C
188 203Right-handed alpha
Helix 32
AD5
C
205 215Right-handed alpha
Helix 33
AD6
C
224 236Right-handed alpha
Helix 34
AD7
D
17 30Right-handed alpha
Helix 35
AD8
D
40 56Right-handed alpha
Helix 36
AD9
D
68 79Right-handed alpha
Helix 37
AE1
D
96 100Right-handed 310
Helix 38
AE2
D
101 113Right-handed alpha
Helix 39
AE3
D
113 131Right-handed alpha
Helix 40
AE4
D
140 144Right-handed 310
Helix 41
AE5
D
150 172Right-handed alpha
Helix 42
AE6
D
188 203Right-handed alpha
Helix 43
AE7
D
205 215Right-handed alpha
Helix 44
AE8
D
224 236Right-handed alpha
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There are 4 sheets in PDB entry 5VA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
33 38parallel
Strand 3
A
9 12parallel
Strand 4
A
84 87parallel
Strand 5
A
133 138parallel
Strand 6
A
176 183parallel
Strand 7
A
247 250parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
33 38parallel
Strand 3
B
9 12parallel
Strand 4
B
84 87parallel
Strand 5
B
133 138parallel
Strand 6
B
176 183parallel
Strand 7
B
247 250parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
33 38parallel
Strand 3
C
9 12parallel
Strand 4
C
84 87parallel
Strand 5
C
133 138parallel
Strand 6
C
176 183parallel
Strand 7
C
247 250parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 63first strand
Strand 2
D
33 38parallel
Strand 3
D
9 12parallel
Strand 4
D
84 87parallel
Strand 5
D
133 138parallel
Strand 6
D
176 183parallel
Strand 7
D
247 250parallel
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