Analysis of interatomic Contacts of Structural Units in PDB entry:
5VAE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VAE entry

There are 8 chains in PDB entry 5VAE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	LYS 529
B	MSE 1	LEU 154
C	MSE 1	GLU 525
D	MSE 1	LEU 154
E	MSE 1	ILE 523
F	MSE 1	LEU 154
G	MSE 1	ILE 523
H	MSE 1	LEU 154

There are 94 helices in PDB entry 5VAE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	44	Right-handed alpha
Helix 2	AA2	A	59	67	Right-handed alpha
Helix 3	AA3	A	77	82	Right-handed alpha
Helix 4	AA4	A	93	97	Right-handed 310
Helix 5	AA5	A	195	201	Right-handed 310
Helix 6	AA6	A	208	224	Right-handed alpha
Helix 7	AA7	A	240	245	Right-handed alpha
Helix 8	AA8	A	258	263	Right-handed alpha
Helix 9	AA9	A	266	269	Right-handed 310
Helix 10	AB1	A	270	277	Right-handed alpha
Helix 11	AB2	A	284	295	Right-handed alpha
Helix 12	AB3	A	298	300	Right-handed 310
Helix 13	AB4	A	316	320	Right-handed 310
Helix 14	AB5	A	332	334	Right-handed 310
Helix 15	AB6	A	336	350	Right-handed alpha
Helix 16	AB7	A	363	382	Right-handed alpha
Helix 17	AB8	A	383	388	Right-handed 310
Helix 18	AB9	A	389	394	Right-handed alpha
Helix 19	AC1	A	418	427	Right-handed alpha
Helix 20	AC2	A	440	451	Right-handed alpha
Helix 21	AC3	A	474	476	Right-handed 310
Helix 22	AC4	A	477	487	Right-handed alpha
Helix 23	AC5	A	489	504	Right-handed alpha
Helix 24	AC6	A	505	507	Right-handed 310
Helix 25	AC7	A	509	524	Right-handed alpha
Helix 26	AC8	C	22	26	Right-handed 310
Helix 27	AC9	C	33	45	Right-handed alpha
Helix 28	AD1	C	59	67	Right-handed alpha
Helix 29	AD2	C	77	83	Right-handed alpha
Helix 30	AD3	C	93	97	Right-handed 310
Helix 31	AD4	C	195	198	Right-handed 310
Helix 32	AD5	C	208	224	Right-handed alpha
Helix 33	AD6	C	240	245	Right-handed alpha
Helix 34	AD7	C	258	263	Right-handed alpha
Helix 35	AD8	C	269	277	Right-handed alpha
Helix 36	AD9	C	284	295	Right-handed alpha
Helix 37	AE1	C	298	300	Right-handed 310
Helix 38	AE2	C	336	349	Right-handed alpha
Helix 39	AE3	C	363	382	Right-handed alpha
Helix 40	AE4	C	383	388	Right-handed 310
Helix 41	AE5	C	389	394	Right-handed alpha
Helix 42	AE6	C	419	426	Right-handed alpha
Helix 43	AE7	C	427	429	Right-handed 310
Helix 44	AE8	C	440	451	Right-handed alpha
Helix 45	AE9	C	474	476	Right-handed 310
Helix 46	AF1	C	477	487	Right-handed alpha
Helix 47	AF2	C	489	506	Right-handed alpha
Helix 48	AF3	C	509	521	Right-handed alpha
Helix 49	AF4	E	22	26	Right-handed 310
Helix 50	AF5	E	33	45	Right-handed alpha
Helix 51	AF6	E	59	67	Right-handed alpha
Helix 52	AF7	E	77	82	Right-handed alpha
Helix 53	AF8	E	93	97	Right-handed 310
Helix 54	AF9	E	195	201	Right-handed 310
Helix 55	AG1	E	208	224	Right-handed alpha
Helix 56	AG2	E	240	245	Right-handed alpha
Helix 57	AG3	E	258	263	Right-handed alpha
Helix 58	AG4	E	266	269	Right-handed 310
Helix 59	AG5	E	270	276	Right-handed alpha
Helix 60	AG6	E	284	295	Right-handed alpha
Helix 61	AG7	E	298	300	Right-handed 310
Helix 62	AG8	E	336	349	Right-handed alpha
Helix 63	AG9	E	363	382	Right-handed alpha
Helix 64	AH1	E	383	388	Right-handed 310
Helix 65	AH2	E	389	394	Right-handed alpha
Helix 66	AH3	E	419	427	Right-handed alpha
Helix 67	AH4	E	440	450	Right-handed alpha
Helix 68	AH5	E	474	476	Right-handed 310
Helix 69	AH6	E	477	487	Right-handed alpha
Helix 70	AH7	E	489	508	Right-handed alpha
Helix 71	AH8	E	508	521	Right-handed alpha
Helix 72	AH9	G	33	45	Right-handed alpha
Helix 73	AI1	G	59	67	Right-handed alpha
Helix 74	AI2	G	77	83	Right-handed alpha
Helix 75	AI3	G	195	198	Right-handed 310
Helix 76	AI4	G	208	224	Right-handed alpha
Helix 77	AI5	G	240	245	Right-handed alpha
Helix 78	AI6	G	258	263	Right-handed alpha
Helix 79	AI7	G	266	269	Right-handed 310
Helix 80	AI8	G	270	276	Right-handed alpha
Helix 81	AI9	G	284	295	Right-handed alpha
Helix 82	AJ1	G	316	320	Right-handed 310
Helix 83	AJ2	G	336	350	Right-handed alpha
Helix 84	AJ3	G	363	382	Right-handed alpha
Helix 85	AJ4	G	383	388	Right-handed 310
Helix 86	AJ5	G	389	394	Right-handed alpha
Helix 87	AJ6	G	419	426	Right-handed alpha
Helix 88	AJ7	G	427	429	Right-handed 310
Helix 89	AJ8	G	440	450	Right-handed alpha
Helix 90	AJ9	G	474	476	Right-handed 310
Helix 91	AK1	G	477	487	Right-handed alpha
Helix 92	AK2	G	489	507	Right-handed alpha
Helix 93	AK3	G	508	520	Right-handed alpha
Helix 94	AK4	H	105	107	Right-handed 310

There are 20 sheets in PDB entry 5VAE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	76	first strand
Strand 2	A	49	53	parallel
Strand 3	A	2	5	parallel
Strand 4	A	230	234	parallel
Strand 5	A	252	257	parallel
Strand 6	A	279	282	parallel
Strand 7	A	302	304	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	107	first strand
Strand 2	A	112	116	anti-parallel
Strand 3	A	119	126	anti-parallel
Strand 4	A	132	138	anti-parallel
Strand 5	A	143	150	anti-parallel
Strand 6	A	154	162	anti-parallel
Strand 7	A	165	172	anti-parallel
Strand 8	A	178	183	anti-parallel
Strand 9	A	191	193	anti-parallel
Strand 10	A	205	206	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	415	first strand
Strand 2	A	353	360	parallel
Strand 3	A	323	330	parallel
Strand 4	A	431	434	parallel
Strand 5	A	454	456	parallel
Strand 6	A	469	471	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	41	45	anti-parallel
Strand 3	B	142	152	anti-parallel
Strand 4	B	81	90	anti-parallel
Strand 5	B	119	123	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	130	135	anti-parallel
Strand 3	B	98	103	anti-parallel
Strand 4	B	109	115	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	76	first strand
Strand 2	C	49	53	parallel
Strand 3	C	2	5	parallel
Strand 4	C	229	234	parallel
Strand 5	C	251	257	parallel
Strand 6	C	279	282	parallel
Strand 7	C	302	304	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	107	first strand
Strand 2	C	112	116	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	132	139	anti-parallel
Strand 5	C	142	149	anti-parallel
Strand 6	C	155	162	anti-parallel
Strand 7	C	165	172	anti-parallel
Strand 8	C	178	183	anti-parallel
Strand 9	C	191	193	anti-parallel
Strand 10	C	205	206	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	415	first strand
Strand 2	C	353	360	parallel
Strand 3	C	323	330	parallel
Strand 4	C	431	434	parallel
Strand 5	C	454	456	parallel
Strand 6	C	469	471	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	41	45	anti-parallel
Strand 3	D	142	152	anti-parallel
Strand 4	D	81	91	anti-parallel
Strand 5	D	119	123	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	59	first strand
Strand 2	D	130	137	anti-parallel
Strand 3	D	96	103	anti-parallel
Strand 4	D	109	115	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	76	first strand
Strand 2	E	49	53	parallel
Strand 3	E	2	5	parallel
Strand 4	E	229	234	parallel
Strand 5	E	251	256	parallel
Strand 6	E	279	282	parallel
Strand 7	E	302	304	parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	106	first strand
Strand 2	E	112	116	anti-parallel
Strand 3	E	119	126	anti-parallel
Strand 4	E	132	139	anti-parallel
Strand 5	E	142	149	anti-parallel
Strand 6	E	155	162	anti-parallel
Strand 7	E	165	172	anti-parallel
Strand 8	E	178	183	anti-parallel
Strand 9	E	191	193	anti-parallel
Strand 10	E	205	206	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	411	415	first strand
Strand 2	E	353	360	parallel
Strand 3	E	323	330	parallel
Strand 4	E	431	434	parallel
Strand 5	E	454	456	parallel
Strand 6	E	469	471	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	36	first strand
Strand 2	F	42	45	anti-parallel
Strand 3	F	142	152	anti-parallel
Strand 4	F	81	90	anti-parallel
Strand 5	F	119	123	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	54	59	first strand
Strand 2	F	130	137	anti-parallel
Strand 3	F	96	103	anti-parallel
Strand 4	F	109	115	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	76	first strand
Strand 2	G	49	53	parallel
Strand 3	G	2	5	parallel
Strand 4	G	229	234	parallel
Strand 5	G	251	257	parallel
Strand 6	G	279	282	parallel
Strand 7	G	302	304	parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	103	107	first strand
Strand 2	G	112	116	anti-parallel
Strand 3	G	119	126	anti-parallel
Strand 4	G	132	139	anti-parallel
Strand 5	G	142	150	anti-parallel
Strand 6	G	154	162	anti-parallel
Strand 7	G	165	172	anti-parallel
Strand 8	G	178	183	anti-parallel
Strand 9	G	191	193	anti-parallel
Strand 10	G	205	206	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	411	415	first strand
Strand 2	G	353	359	parallel
Strand 3	G	323	329	parallel
Strand 4	G	431	434	parallel
Strand 5	G	454	456	parallel
Strand 6	G	470	471	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	38	first strand
Strand 2	H	41	45	anti-parallel
Strand 3	H	142	152	anti-parallel
Strand 4	H	81	91	anti-parallel
Strand 5	H	119	123	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	59	first strand
Strand 2	H	130	136	anti-parallel
Strand 3	H	98	103	anti-parallel
Strand 4	H	109	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VAE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VAE