Analysis of interatomic Contacts of Structural Units in PDB entry:
5VAO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VAO entry

There are 8 chains in PDB entry 5VAO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 140PRO 266
B
 GLY 139GLN 267
C
 GLY 139GLN 267
D
 GLY 139GLN 267
E
 PRO 602ARG 612
F
 PRO 602ARG 612
G
 PRO 602ARG 612
H
 PRO 602ARG 612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5VAO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 156Right-handed alpha
Helix 2
AA2
A
163 179Right-handed alpha
Helix 3
AA3
A
180 181Right-handed 310
Helix 4
AA4
A
182 184Right-handed 310
Helix 5
AA5
A
185 198Right-handed alpha
Helix 6
AA6
A
200 202Right-handed 310
Helix 7
AA7
A
203 216Right-handed alpha
Helix 8
AA8
A
220 230Right-handed alpha
Helix 9
AA9
A
231 247Right-handed alpha
Helix 10
AB1
A
254 263Right-handed alpha
Helix 11
AB2
B
143 156Right-handed alpha
Helix 12
AB3
B
163 179Right-handed alpha
Helix 13
AB4
B
180 181Right-handed 310
Helix 14
AB5
B
182 184Right-handed 310
Helix 15
AB6
B
185 198Right-handed alpha
Helix 16
AB7
B
200 202Right-handed 310
Helix 17
AB8
B
203 216Right-handed alpha
Helix 18
AB9
B
220 230Right-handed alpha
Helix 19
AC1
B
231 247Right-handed alpha
Helix 20
AC2
B
254 263Right-handed alpha
Helix 21
AC3
C
143 156Right-handed alpha
Helix 22
AC4
C
163 179Right-handed alpha
Helix 23
AC5
C
180 181Right-handed 310
Helix 24
AC6
C
182 184Right-handed 310
Helix 25
AC7
C
185 198Right-handed alpha
Helix 26
AC8
C
200 202Right-handed 310
Helix 27
AC9
C
203 216Right-handed alpha
Helix 28
AD1
C
220 230Right-handed alpha
Helix 29
AD2
C
231 247Right-handed alpha
Helix 30
AD3
C
254 263Right-handed alpha
Helix 31
AD4
D
143 156Right-handed alpha
Helix 32
AD5
D
163 179Right-handed alpha
Helix 33
AD6
D
180 181Right-handed 310
Helix 34
AD7
D
182 184Right-handed 310
Helix 35
AD8
D
185 198Right-handed alpha
Helix 36
AD9
D
200 202Right-handed 310
Helix 37
AE1
D
203 216Right-handed alpha
Helix 38
AE2
D
220 230Right-handed alpha
Helix 39
AE3
D
231 247Right-handed alpha
Helix 40
AE4
D
254 263Right-handed alpha
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There are no sheets in PDB entry 5VAO
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