Analysis of interatomic Contacts of Structural Units in PDB entry:
5VAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VAP entry

There are 4 chains in PDB entry 5VAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 142GLU 252
D
 THR 601ARG 612
B
 ILE 142SER 253
C
 PRO 602ARG 612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5VAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 156Right-handed alpha
Helix 2
AA2
A
163 179Right-handed alpha
Helix 3
AA3
A
180 181Right-handed 310
Helix 4
AA4
A
182 184Right-handed 310
Helix 5
AA5
A
185 198Right-handed alpha
Helix 6
AA6
A
200 202Right-handed 310
Helix 7
AA7
A
203 216Right-handed alpha
Helix 8
AA8
A
220 230Right-handed alpha
Helix 9
AA9
A
231 247Right-handed alpha
Helix 10
AB1
B
143 156Right-handed alpha
Helix 11
AB2
B
163 179Right-handed alpha
Helix 12
AB3
B
180 181Right-handed 310
Helix 13
AB4
B
182 184Right-handed 310
Helix 14
AB5
B
185 198Right-handed alpha
Helix 15
AB6
B
200 202Right-handed 310
Helix 16
AB7
B
203 216Right-handed alpha
Helix 17
AB8
B
220 230Right-handed alpha
Helix 18
AB9
B
231 247Right-handed alpha
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There are no sheets in PDB entry 5VAP
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