Analysis of interatomic Contacts of Structural Units in PDB entry:
5VAQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VAQ entry

There are 3 chains in PDB entry 5VAQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 53PHE 969
B
 VAL 2SER 124
C
 PRO 186SER 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5VAQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 62Right-handed 310
Helix 2
AA2
A
92 97Right-handed alpha
Helix 3
AA3
A
101 105Right-handed 310
Helix 4
AA4
A
108 118Right-handed alpha
Helix 5
AA5
A
133 145Right-handed alpha
Helix 6
AA6
A
154 159Right-handed alpha
Helix 7
AA7
A
168 185Right-handed alpha
Helix 8
AA8
A
199 207Right-handed alpha
Helix 9
AA9
A
208 212Right-handed 310
Helix 10
AB1
A
213 230Right-handed alpha
Helix 11
AB2
A
241 251Right-handed alpha
Helix 12
AB3
A
262 288Right-handed alpha
Helix 13
AB4
A
288 293Right-handed alpha
Helix 14
AB5
A
312 336Right-handed alpha
Helix 15
AB6
A
341 348Right-handed alpha
Helix 16
AB7
A
356 362Right-handed alpha
Helix 17
AB8
A
375 379Right-handed 310
Helix 18
AB9
A
381 385Right-handed 310
Helix 19
AC1
A
395 407Right-handed alpha
Helix 20
AC2
A
429 449Right-handed alpha
Helix 21
AC3
A
467 471Right-handed 310
Helix 22
AC4
A
493 506Right-handed alpha
Helix 23
AC5
A
579 590Right-handed alpha
Helix 24
AC6
A
602 607Right-handed alpha
Helix 25
AC7
A
611 615Right-handed 310
Helix 26
AC8
A
616 633Right-handed alpha
Helix 27
AC9
A
652 658Right-handed alpha
Helix 28
AD1
A
659 662Right-handed 310
Helix 29
AD2
A
663 682Right-handed alpha
Helix 30
AD3
A
694 702Right-handed 310
Helix 31
AD4
A
704 730Right-handed alpha
Helix 32
AD5
A
730 735Right-handed alpha
Helix 33
AD6
A
754 769Right-handed alpha
Helix 34
AD7
A
769 778Right-handed alpha
Helix 35
AD8
A
783 796Right-handed alpha
Helix 36
AD9
A
807 815Right-handed alpha
Helix 37
AE1
A
840 845Right-handed alpha
Helix 38
AE2
A
866 881Right-handed alpha
Helix 39
AE3
A
900 920Right-handed alpha
Helix 40
AE4
A
953 965Right-handed alpha
Helix 41
AE5
B
62 65Right-handed 310
Helix 42
AE6
B
74 76Right-handed 310
Helix 43
AE7
B
87 91Right-handed 310
Helix 44
AE8
B
107 111Right-handed 310
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There are 10 sheets in PDB entry 5VAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
148 152parallel
Strand 3
A
188 194parallel
Strand 4
A
235 240parallel
Strand 5
A
295 301parallel
Strand 6
A
370 374parallel
Strand 7
A
411 417parallel
Strand 8
A
453 460parallel
Strand 9
A
86 90parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 306first strand
Strand 2
A
391 393anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
474 475anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 481first strand
Strand 2
A
490 492anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 520first strand
Strand 2
A
966 967anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 533first strand
Strand 2
A
596 600parallel
Strand 3
A
636 642parallel
Strand 4
A
687 692parallel
Strand 5
A
737 743parallel
Strand 6
A
821 824parallel
Strand 7
A
885 889parallel
Strand 8
A
925 931parallel
Strand 9
A
526 533parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 749first strand
Strand 2
A
828 833parallel
Strand 3
A
847 849anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
118 123parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
118 123parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
113 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il