Analysis of interatomic Contacts of Structural Units in PDB entry:
5VAT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VAT entry

There are 2 chains in PDB entry 5VAT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 33ASN 575
B
 ASN 33PRO 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 5VAT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 40Right-handed 310
Helix 2
AA2
A
45 52Right-handed alpha
Helix 3
AA3
A
58 76Right-handed alpha
Helix 4
AA4
A
78 89Right-handed alpha
Helix 5
AA5
A
93 111Right-handed alpha
Helix 6
AA6
A
113 123Right-handed alpha
Helix 7
AA7
A
130 148Right-handed alpha
Helix 8
AA8
A
150 164Right-handed alpha
Helix 9
AA9
A
167 185Right-handed alpha
Helix 10
AB1
A
186 193Right-handed alpha
Helix 11
AB2
A
198 215Right-handed alpha
Helix 12
AB3
A
217 232Right-handed alpha
Helix 13
AB4
A
235 240Right-handed alpha
Helix 14
AB5
A
242 244Right-handed 310
Helix 15
AB6
A
245 250Right-handed alpha
Helix 16
AB7
A
269 285Right-handed alpha
Helix 17
AB8
A
300 311Right-handed alpha
Helix 18
AB9
A
321 330Right-handed alpha
Helix 19
AC1
A
331 336Right-handed 310
Helix 20
AC2
A
361 376Right-handed alpha
Helix 21
AC3
A
388 407Right-handed alpha
Helix 22
AC4
A
417 419Right-handed 310
Helix 23
AC5
A
420 428Right-handed alpha
Helix 24
AC6
A
440 453Right-handed alpha
Helix 25
AC7
A
464 467Right-handed 310
Helix 26
AC8
A
468 473Right-handed alpha
Helix 27
AC9
A
474 481Right-handed alpha
Helix 28
AD1
A
489 494Right-handed 310
Helix 29
AD2
A
497 508Right-handed alpha
Helix 30
AD3
A
510 528Right-handed alpha
Helix 31
AD4
A
529 536Right-handed alpha
Helix 32
AD5
B
33 38Right-handed 310
Helix 33
AD6
B
45 52Right-handed alpha
Helix 34
AD7
B
58 76Right-handed alpha
Helix 35
AD8
B
78 88Right-handed alpha
Helix 36
AD9
B
93 111Right-handed alpha
Helix 37
AE1
B
113 123Right-handed alpha
Helix 38
AE2
B
130 148Right-handed alpha
Helix 39
AE3
B
150 163Right-handed alpha
Helix 40
AE4
B
167 185Right-handed alpha
Helix 41
AE5
B
186 192Right-handed alpha
Helix 42
AE6
B
198 215Right-handed alpha
Helix 43
AE7
B
217 232Right-handed alpha
Helix 44
AE8
B
235 240Right-handed alpha
Helix 45
AE9
B
242 247Right-handed alpha
Helix 46
AF1
B
269 285Right-handed alpha
Helix 47
AF2
B
300 311Right-handed alpha
Helix 48
AF3
B
321 330Right-handed alpha
Helix 49
AF4
B
331 336Right-handed 310
Helix 50
AF5
B
361 376Right-handed alpha
Helix 51
AF6
B
388 407Right-handed alpha
Helix 52
AF7
B
417 419Right-handed 310
Helix 53
AF8
B
420 429Right-handed alpha
Helix 54
AF9
B
440 453Right-handed alpha
Helix 55
AG1
B
464 467Right-handed 310
Helix 56
AG2
B
468 473Right-handed alpha
Helix 57
AG3
B
474 481Right-handed alpha
Helix 58
AG4
B
489 494Right-handed 310
Helix 59
AG5
B
497 508Right-handed alpha
Helix 60
AG6
B
510 528Right-handed alpha
Helix 61
AG7
B
529 536Right-handed alpha
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There are 6 sheets in PDB entry 5VAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 295first strand
Strand 2
A
259 263parallel
Strand 3
A
315 317parallel
Strand 4
A
339 342parallel
Strand 5
A
355 357parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 415first strand
Strand 2
A
382 386parallel
Strand 3
A
434 437parallel
Strand 4
A
459 462parallel
Strand 5
A
485 488parallel
Strand 6
A
561 566anti-parallel
Strand 7
A
569 574anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
546 550anti-parallel
Strand 3
A
556 559anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 295first strand
Strand 2
B
259 263parallel
Strand 3
B
315 317parallel
Strand 4
B
339 342parallel
Strand 5
B
355 357parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 415first strand
Strand 2
B
382 386parallel
Strand 3
B
433 437parallel
Strand 4
B
458 462parallel
Strand 5
B
485 488parallel
Strand 6
B
561 566anti-parallel
Strand 7
B
569 574anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 543first strand
Strand 2
B
546 550anti-parallel
Strand 3
B
556 559anti-parallel
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