Analysis of interatomic Contacts of Structural Units in PDB entry:
5VAX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VAX entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 5VAX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 9ARG 207
E
 MET 109GLN 129
B
 THR 7ARG 207
F
 MET 109GLY 128
C
 ASP 10GLY 203
G
 GLY 107GLY 107
G
 MET 109GLN 129
D
 TYR 9PRO 204
H
 MET 109GLY 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5VAX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 25Right-handed alpha
Helix 2
AA2
A
89 112Right-handed alpha
Helix 3
AA3
A
114 119Right-handed 310
Helix 4
AA4
A
125 138Right-handed alpha
Helix 5
AA5
A
143 164Right-handed alpha
Helix 6
AA6
A
168 185Right-handed alpha
Helix 7
AA7
A
185 192Right-handed alpha
Helix 8
AA8
A
193 203Right-handed alpha
Helix 9
AA9
A
204 206Right-handed 310
Helix 10
AB1
E
109 128Right-handed alpha
Helix 11
AB2
B
8 26Right-handed alpha
Helix 12
AB3
B
88 112Right-handed alpha
Helix 13
AB4
B
116 120Right-handed 310
Helix 14
AB5
B
125 140Right-handed alpha
Helix 15
AB6
B
143 164Right-handed alpha
Helix 16
AB7
B
168 185Right-handed alpha
Helix 17
AB8
B
185 192Right-handed alpha
Helix 18
AB9
B
194 203Right-handed alpha
Helix 19
AC1
B
204 206Right-handed 310
Helix 20
AC2
F
109 128Right-handed alpha
Helix 21
AC3
C
11 25Right-handed alpha
Helix 22
AC4
C
91 112Right-handed alpha
Helix 23
AC5
C
115 119Right-handed 310
Helix 24
AC6
C
125 139Right-handed alpha
Helix 25
AC7
C
143 164Right-handed alpha
Helix 26
AC8
C
168 184Right-handed alpha
Helix 27
AC9
C
185 192Right-handed alpha
Helix 28
AD1
C
193 203Right-handed alpha
Helix 29
AD2
G
108 127Right-handed alpha
Helix 30
AD3
D
10 26Right-handed alpha
Helix 31
AD4
D
92 112Right-handed alpha
Helix 32
AD5
D
114 119Right-handed 310
Helix 33
AD6
D
125 139Right-handed alpha
Helix 34
AD7
D
143 164Right-handed alpha
Helix 35
AD8
D
168 185Right-handed alpha
Helix 36
AD9
D
185 191Right-handed alpha
Helix 37
AE1
D
193 203Right-handed alpha
Helix 38
AE2
H
109 128Right-handed alpha
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There are no sheets in PDB entry 5VAX
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