Analysis of interatomic Contacts of Structural Units in PDB entry:
5VAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VAY entry

There are 8 chains in PDB entry 5VAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1MET 206
B
 ALA 4SER 205
C
 TYR 9PRO 204
D
 ASP 10GLY 203
E
 ASP 108GLY 128
G
 GLY 107SER 127
F
 ASP 108GLY 128
H
 ASP 108SER 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5VAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 25Right-handed alpha
Helix 2
AA2
A
91 112Right-handed alpha
Helix 3
AA3
A
114 119Right-handed 310
Helix 4
AA4
A
125 138Right-handed alpha
Helix 5
AA5
A
143 164Right-handed alpha
Helix 6
AA6
A
168 185Right-handed alpha
Helix 7
AA7
A
185 192Right-handed alpha
Helix 8
AA8
A
193 203Right-handed alpha
Helix 9
AA9
B
6 25Right-handed alpha
Helix 10
AB1
B
90 113Right-handed alpha
Helix 11
AB2
B
122 138Right-handed alpha
Helix 12
AB3
B
143 164Right-handed alpha
Helix 13
AB4
B
168 185Right-handed alpha
Helix 14
AB5
B
185 192Right-handed alpha
Helix 15
AB6
B
193 203Right-handed alpha
Helix 16
AB7
C
10 25Right-handed alpha
Helix 17
AB8
C
91 112Right-handed alpha
Helix 18
AB9
C
114 119Right-handed 310
Helix 19
AC1
C
125 139Right-handed alpha
Helix 20
AC2
C
143 164Right-handed alpha
Helix 21
AC3
C
168 185Right-handed alpha
Helix 22
AC4
C
185 192Right-handed alpha
Helix 23
AC5
C
193 203Right-handed alpha
Helix 24
AC6
D
11 25Right-handed alpha
Helix 25
AC7
D
91 112Right-handed alpha
Helix 26
AC8
D
114 119Right-handed 310
Helix 27
AC9
D
125 139Right-handed alpha
Helix 28
AD1
D
143 164Right-handed alpha
Helix 29
AD2
D
168 185Right-handed alpha
Helix 30
AD3
D
185 192Right-handed alpha
Helix 31
AD4
D
193 203Right-handed alpha
Helix 32
AD5
E
109 128Right-handed alpha
Helix 33
AD6
G
108 127Right-handed alpha
Helix 34
AD7
F
109 128Right-handed alpha
Helix 35
AD8
H
109 126Right-handed alpha
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There are no sheets in PDB entry 5VAY
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